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Beautiful comparison by Rachel Scanza of nascent transcripts in my paper to star and galaxy formation 🥰 🥰 Thank you thank you🌟🌟

Happy to share that our manuscript about role of Myc in placental development and ploidy regulation is published now. Thank you Jennifer Gerton for giving me opportunity to work on this project and all your support. journals.biologists.com/dev/article/15…

Do only pioneer TFs open chromatin? No! Does motif affinity affect how well pioneering TFs work? Yes! Learn more by checking out our manuscript, now out in Developmental Cell! sciencedirect.com/science/articl…

This is by far the most convincing regulatory DNA synthetic design paper to date. Congrats to the authors 1/

Official announcement: this September 1, I am starting as an assistant professor in biological sciences at SUNY, Albany! Anyone interested in joining the lab, please contact me. Sdashlab.org American Association for Anatomy Society for Developmental Biology Stowers Institute University at Albany

Many many congratses Dr Khyati Dalal!!! U did it 🙌🙌🙌 🎓🎓🎓🎉🎉🎉 happy fa all u have achieved by learning and applying new technology to understand the rules governing DNA sequences..keepin an eye out for the paper😍 You rocking Doc Khyati Dalal 🍾🥳💃 Stowers Institute

We farewelled stellar post-doc Soma Dash to start her own lab in Biological Sciences SUNY - The State University of New York, University at Albany. Congratulations Soma, we are delighted for you. It was great to have you in the lab and we look forward to all your discoveries and future success. American Association for Anatomy Stowers Institute

Are promoters just landing pads for the transcriptional machinery? No! They can be key regulatory centers during development. Vivek Ramalingam shows this in some beautiful new work published in Nature Communications. Thread below: (1/6) doi.org/10.1038/s41467…

Computer vision has been solved.

It's that time of year!! 🎉We are so excited to announce our 2023 pick for Nature Methods' Method of the Year: methods for modeling development. Read the Editorial to find out why we chose this as our pick. #moty2023 nature.com/articles/s4159…

Delighted to share new review paper published in Trends Cell Biology ! We discuss emerging new models of enhancer functions, including our favorite 'transcription hub' model. "Regulatory Landscape of Enhancer-mediated Transcriptional Activation." Link here: authors.elsevier.com/a/1ibIs3QxxSux…

I'm very excited to share our recent work titled:"Interpretable deep learning reveals the sequence rules of Hippo signaling" is now on bioRxiv!

I am thrilled to present the published version of my graduate work. We followed a bunch of crazy looking animals and they turned out to be very informative! 😃 Thanks to A. Sánchez Alvarado, Frederick Mann, PhD, and everyone at Stowers Institute Stowers Grad School doi.org/10.1073/pnas.2…

Check out Vivekanandan Ramalingam talk today at CSHL Meetings #BoG24 in the afternoon session on "Deciphering the cis-regulatory code of TF binding across the ENCODE compendium" 1/

So Jeremy Farrar asked for an "explainer thread" on Noble Prizes in Chemistry around AlphaFold and Protein design, so here goes.

How does one (signaling) arm know what the other is doing in the cell? Through a network of bHLH transcription factors obviously! Our work showing how neural stem cells integrate signals to coordinate a fate response is now out: cell.com/cell-reports/f…

New #research from the ZeitlingerLab uses #AI to decipher how cells respond to developmental cues, potentially paving the way for personalized #medicine + original artwork from the lab was selected for the cover of Cell Genomics. Read more: bit.ly/426OoSg

Excited to share my first contribution here at Illumina! We developed PromoterAI, a deep neural network that accurately identifies non-coding promoter variants that disrupt gene expression.🧵 (1/)

What a mind-blowing week for AI in biology! 🚀 Xaira just dropped the largest genome-wide perturbation dataset ever last week 🧬 Arc unveiled STATE yesterday, the most powerful foundation model for single-cell perturbation prediction 🧠 DeepMind followed up with AlphaGenome,