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Our first paper on the analysis of the 10x FLEX Chromium single cell platform . In general the quality is good but you might be getting more doublets than you anticipated Jovana Maksimovic Melanie Neeland @ShivanthanS Gunjan Dixit Peter Hickey

TIL of fastqe, an emoji encoding of sequencing data files by Dr Andrew Lonsdale ( ➡️ Lonsbio.bsky.social ), a very clever and helpful tool: github.com/fastqe/biomoji… Special #AGTA24 mobile device demo: http://115.146.95.20:8080/

Awesome talk, Andrew Lonesdale 😁🧬 Demystifying seq data with emojis ✌️😉👻

Emerging technologies session continues Jovana Maksimonic 10Xflex #AGTA24 Australasian Genomic Technologies Association AGTA

Australasian Genomic Technologies Association AGTA Jovana Maksimovic Great data from Jovana Maksimovic on using 10x Genomics flex probes to capture fusions in scRNAseq. My brain’s spinning with the possible applications (including MRD and CTC characterisation) #AGTA24

Alicia Oshlack running a tight ship chairing the Bioinformatics in Cancer and Immunology session, great talks, insightful questions and finishing on time! #abacbs24

Andreas Halman guides you through the analysis of STRs with short read sequencing in our new paper in Current Protocols Dr Andrew Lonsdale ( ➡️ Lonsbio.bsky.social ) …rentprotocols.onlinelibrary.wiley.com/doi/10.1002/cp…

I am updating my lecture slides on #spatialtranscriptomics to use author names + remove journal names to de-emphasize brands and re-emphasize people per #HHMI recs. In the process, I realized ALL the seminal techdev work has been led by co-first authors contributing equally 🧵1/3

Be quick! You still have time to submit an oral abstract and get early bird prices

Thanks to a WCRF International grant Dr Kara Britt and a team Peter Mac Cancer Centre (Shom Goel, Alicia Oshlack) will be exploring the links between #obesity & #BreastCancer - read more about this novel research here... petermac.org/about-us/news-…

Pleased to share that our #earlyAIR cross-tissue, age-specific, #flowcytometry reference of immune cells from five tissues of the pediatric #airway is now published in Journal of Allergy and Clinical Immunology. jacionline.org/article/S0091-… CZI Science Murdoch Children's Research Institute (MCRI) UniMelb MDHS The Royal Children's Hospital, Melbourne

Dr @gerrythill has received an NHMRC grant to help address the issue of #antimicrobial resistance, specifically in candida fungal infections. Read more about this, and other grants, hoping to tackle the growing global issue of antimicrobial resistance: nhmrc.gov.au/about-us/news-…

OzSingleCell Omics, #ozsinglecell25 has a new web address. ozsinglecell.com See the current list of invited speakers and stay tuned for registration details. Sponsors reach out to [email protected]

Very happy to release the single cell and spatial long read RNA seq module for our transcript discovery and quantification tool Bambu (Bambu-clump)! The key challenges were dimensionality and accurate estimation of transcript expression with minimal data biorxiv.org/content/10.110…

Single-cell atlas of BAL from preschool cystic fibrosis reveals key inflammatory pathways modified by the CFTR modulator ivacaftor in the early life lung. medrxiv.org/content/10.110…

We are happy to share that our SG-NEx manuscript (led by Chen Ying, Nadia Davidson, Yuk Kei Wan and Jonathan Göke), is now out with open access: doi.org/10.1038/s41592…, together with an update release of SG-NEx data v0.6.0!

The 15th of March is LC Awareness Day! I acknowledge people everywhere impacted by LC, & am very grateful for the leadership of those with LC who's awareness raising is the single most important factor toward finding solutions - Jordan Crane Plum Jam #righttosafehealthcare & many others

Just got back from #ozsinglecell2025. One of the high points of my year so far :-). Amazing science, chill vibe, nurturing research community. Congrats to Joseph Powell Shalin Naik Alicia Oshlack and the entire team for building something great!