
Federico Di Marco
@allen_bioinf
Bioinformatician @ Emerging Bacterial Pathogens Unit - San Raffaele Scientific Institute 🦠/
Local Bard in my free time 🎶
ID: 40629691
https://github.com/Allen13x 17-05-2009 08:29:19
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64 Followers
293 Following


Thrilled to have attended the EMBO workshop "Plasmids as vehicles of AMR spread" 🧬🔬. Truly inspiring discussions. Thanks to all the brilliant minds who shared their insights and to those who made it happen! AliceLedda, PhD 💙 Zamin Iqbal ICTP #Plasmids #EMBO



Excited to present CONGAS+, out now in PLOS Comp Biol CONGAS+ integrates #single_cell #RNA and #ATAC data (either from independent or multimodal assays) to cluster cells into #cancer clones with similar copy number profiles, offering a new way to map genotypes with phenotypes



Our last research letter "Single-Cell RNA Sequencing Shows that Circulating #Monocytes, Enriched in #Interferon-Signalling, Are Associated with #Nontuberculous #Mycobacteria Pulmonary Disease in #CysticFibrosis" (1/7) ATS Blue Journal atsjournals.org/doi/abs/10.116…

One in four people are living with the deadliest infectious disease. Tuberculosis has outlasted civilizations. Find out why it's still here as we go deeper into its history and biology with the help of 🐢🐢🐢John Green🐢🐢🐢 : kgs.link/Tuberculosis


A wonderful conference in one of my favourite cities. It's been a pleasure to share our results for the detection of #pathogen transcripts with #SpatialTranscriptomics. Thanks to the European Society of Mycobacteriology for the great time





I finally got around to testing HERRO (github.com/lbcb-sci/herro), the new Oxford Nanopore read correction algorithm which takes simplex ONT reads to PacBio-HiFi-level accuracy. I was impressed! Findings are on my blog in a two-part post: rrwick.github.io/2024/07/26/her… rrwick.github.io/2024/07/31/her…

Happy to share our work on the use of Nanopore-based targeted sequencing for Mycobacterium tuberculosis on JClinMicro EIC #Mycobacteriumtuberculosis #Nanopore journals.asm.org/doi/10.1128/jc…

Single-Cell RNA Sequencing Shows that Circulating Monocytes Enriched in IFN Signaling Are Associated with Nontuberculous Mycobacteria Pulmonary Disease in Cystic Fibrosis Nicola Lorè Stefano de Pretis Ospedale San Raffaele American Thoracic Society (ATS) 🔓 Open Access 🔗 tinyurl.com/y88xbvfc


Extremely happy to share our new work on bacterial probes for Spatial Transcriptomics. A huge group effort with Francesca Nicola Stefano de Pretis Nicola Lorè :) nature.com/articles/s4200…


It's out⚡️⚡️! #Dual spatial gene expression approach to dissect #host-#bacteria interaction in respiratory infections. Communications Biology (1/4) rdcu.be/dWuBQ nature.com/articles/s4200…

An inspiring experience at the EMBO workshop for #Spatialtranscriptomics! Great topics, food and music. Thanks to my bacterial-team for the fun too! 🦠 Nicola Lorè Stefano de Pretis Francesca Nicola #spatial #Bioinformatics #ntm

Postdoc opportunity (18 mos) Join our team to develop pipelines for single-cell seq data in an Fondazione AIRC per la ricerca sul cancro funded project! Looking for bioinformaticians and data scientists passionate about cutting-edge research (and fun too!) Apply by Dec 3rd: unimib.it/ateneo/gare-e-… please RT!
