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Our preprint describing the VICC and our meta-knowledgebase is out! It was a real privilege to work with the outstanding experts of our consortium at cancervariants.org, and I'm looking forward to all that we're planning to do next! x.com/biorxivpreprin…

Just released: NIH and Google partnership bit.ly/2NJnOWn finally able to work directly with CSPs! The NIH Data Commons effort will pilot some of the partnership with Google #NIHStrides

🐳 combines the best of a bunch o' tools ⇩ "liftr: an R Package for Persistent Reproducible Research" 🗣 @road2stat buff.ly/2M0l0ne #rstats #JSM2018

New alpha release of Monocle 3 out today (v2.99.1), with lots of new features for clustering and finding markers for cell types. See a tutorial for how to use the new stuff here: cole-trapnell-lab.github.io/monocle-releas…

We all have that one weird cousin. #vibrio #evolution #SciArt

Conda for data? Yes please. anaconda.com/blog/developer…

After a decade of work, the genome for bread wheat has finally come into focus: scim.ag/2MtJbho

My team's first day at the new OHSU Knight Cancer Institute Cancer Research Building

Very excited to lead implementation of the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL) along with Anthony Philippakis Broad Institute... genomeweb.com/informatics/br…

Researchers at OHSU Knight Cancer Institute have built a new kind of #clinicaltrials platform to find combinations of drugs to use to stop tumors before they can adapt and become drug-resistant: bit.ly/2DrG0BW #OHSUresearch

Great story about our precision oncology work at OHSU Knight Cancer Institute : onwardohsu.org/blog/detail/pr…

For science!! Healthy Oregon Project

I'll be speaking at Bio-IT World on our visualization work and needs in precision oncology at OHSU Knight Cancer Institute

Registration & Abstract Submission for the 2019 Galaxy Community Conference (GCC2019) are now open! galaxyproject.org/news/2019-03-g… #usegalaxy and see you in Freiburg!

Open letter from Kyle Ellrott, @justin_guinney and co, that looks back at recent DREAM M2D challenges to explore how reproducibility can be improved, including protecting sensitive data in the cloud genomebiology.biomedcentral.com/articles/10.11…

What is a human tumor atlas? Here's an overview: cancer.gov/research/key-i… (PDF) @NCIHTAN #CancerResearch

Once we understand how the cancer has become resistant we are able to identify a drug or drugs that can be combined together to regain control of the cancer." -Dr. Joe Gray bit.ly/2OWnszb

“I never dreamed that the tumors would be reduced and that there would be nothing new.” -SMMART patient Beth Shia Our SMMART clinical trial platform is profiled in this Great Big Story video highlighting OHSU’s collaboration with Micron Technology. Learn more: greatbig.is/2Oh9Nkx

Galaxy Release 19.09 is out! Workflow Invocation Reports, Interactive Tools, and new Visualizations are the highlights. Thanks to everyone who helped us debug and polish this beast of a release. Release Notes: docs.galaxyproject.org/en/master/rele… User Notes: docs.galaxyproject.org/en/release_19.…

A massive team science effort involving researchers spanning the globe: Today, UCSCGenomics @StuartLab @BrooksLab @ucscxena were among >1,300 publishing the #PanCancer Project, a huge milestone in cancer research. 👏👏🏻👏🏼👏🏽👏🏾👏🏿 🔬💻 Watch youtu.be/i_pldYFZMBo #PCAWG