Machine learning dissection of human accelerated regions in primate neurodevelopment cell.com/neuron/fulltex…

Extremely honored for this. Thanks to my lab, IHG members and staff and so many people at UCSF! Looking forward to advancing the IHG and genetics and genomics research at UCSF!

Excited and proud to present the first paper from the Kreimer lab!!! mdpi.com/1422-0067/24/4… Great work by Justin Koesterich and collaboration with Stephan Sanders Joon An Taka Inoue Nadav Ahituv Rutgers CABM

MPRA identifies 46,802 enhancers & 164 psychiatric disorder variants in the developing cortex & organoids. Outstanding work by Chengyu Deng, Sean Whalen & Katie Pollard in collaboration with Nowakowski_Lab, Alex Pollen + many others in psychENCODE. biorxiv.org/content/10.110…

MPRA on 680,000 sequences comprehensively covering all active regulatory elements in 3 cell lines (HepG2,K562,iPSCs). Tour de force by @vagar112 & Taka Inoue, Jay Shendure and Martin Kircher as part of our ENCODE Project project. biorxiv.org/content/10.110…

New manuscript with exciting findings 🥳 Utilizing nullomers in cell-free RNA for early cancer detection medrxiv.org/content/10.110…

It was a pleasure to host Anat Kreimer 💔 and hear about her work on multi-parallel reporter assays (MPRAs) to decipher the function of non-coding variants and their association with diseases Bar-Ilan University. Thanks for visiting and enjoy your time in Israel!

Our joint work with Bonnie Berger Lab (Barış Ekim) and Ron Shamir (David Pellow, Lianrong Pu) on minimizers orders based of minimum decycling sets to speed up high-throughput sequencing applications is finally published in Genome Research: genome.cshlp.org/content/early/…. Thanks USIsraelBSF!

I usually leave politics off this site. But the amount of antisemitism on display is pretty crazy. To all my Jewish friends and colleagues, I’m sorry and realizing I really didn’t understand/see it until now.

Happy to share our paper is published in NAR today !!! Nadav Ahituv Yosef Lab @TalAshuach Taka Inoue Rutgers CABM academic.oup.com/nar/advance-ar…

Massively parallel jumping assay (MPJA). High throughput assay to assess the jumping potential of thousands of retrotransposon sequences/haplotypes. Amazing work by Navneet Matharu, Jingjing_Zhao, Martin Kircher and many others. biorxiv.org/content/10.110…

Our paper is out today !!! link.springer.com/article/10.118… Rutgers CABM Nadav Ahituv Nir Yosef Taka Inoue @TalAshuach

Our new paper with Nan Yang is out today !!! mdpi.com/1422-0067/25/1… Sarah Williams Rutgers CABM

🚀 Proud to launch ⭐Path2Space⭐ — the first AI to discover spatial biomarkers for cancer treatment! It predicts spatial gene expression from histopathology, enabling large-scale tumor microenvironment profiling. biorxiv.org/content/10.110… 🧵1/11