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More improvements to the cutting edge version controlled GEM of S. cerevisiae: yeast 8.1.0 brings a new way of constraining lipid metabolism + full compatibility with SBML DD-DeCaF SBML github.com/SysBioChalmers…

Our latest work on genome-scale model reconstruction, funded by #DDDecaf, is now online on NAR: academic.oup.com/nar/advance-ar…

News from my flagship project: GECKO v1.3 is out, and it includes a revamped protein flexibilization algorithm for automatically integrating proteomics data into GEMs. Check out more at: github.com/SysBioChalmers…

Ho-ly-guac, that was an intense episode! BoB please be more careful and forever thank Apple Scrumper #NADDPod (PS can highly recommend this podcast)

Today on valentine's day, I wanna give a shout-out to the one I've been thinking about non-stop for the past months, and whose mere sight keeps me restless at night: my PhD thesis #PhDlife #HappyValentinesDay🔜👨‍🎓🏖️

Hi Twitter, I have a website now: benjasanchez.com atm is more of an online CV, but 1) you can read informal summaries of papers I've co-authored from my exclusive POV and 2) expect sporadic posts about random things I find interesting 😉👨‍💻🚀

Would I get COVID-19 if I haven’t seen the first eighteen of them?

Denmark is closing. All non-vital public institutions are shut down. Gatherings +100 are forbidden by law. More to come. Holy crap. #COVID19 #COVID19dk

We are facing a crisis, but no food shortage. Please do NOT hoard. Salling Group, Coop, Dagrofa, and Rema 1000 confirm there is no food shortage. #dkpol #COVID19dk

A pre-print from work I did in my PhD together with Lahtvee Lab Iván Domenzain Aleksej Zelezniak🇺🇦 Jens Nielsen and other talented researchers is now out. I hope it will be useful for anyone out there working with absolute proteomics data doi.org/10.1101/2020.0… #researchFromHome

Excited to have this publication out - the tool has of course been available for a while cameo.bio. Funded by DD-DeCaF and DTU Biosustain x.com/PabloINik/stat…

Very happy and inspired after another great DD-DeCaF meeting. Thanks EPFL for hosting! Laussane treated us well

Someone was recently telling me they were a "Code Ninja". I don't want to work with a Ninja, they leave a bloody mess. I want to work with a "Code Janitor". Comes in the middle of the night, cleans things up, you only know they were there because everything is organized and tidy.

The RAVEN 2 pre-print is out! Moving metabolic model reconstruction in the right direction, happy to have collaborated here biorxiv.org/content/early/…

yeast-GEM 8.0.2 is now released! Compatible with cobrapy, after popular demand Darren Platt @[email protected] Willi Moritz E. Beber @ChristianLieven DD-DeCaF github.com/SysBioChalmers…

New pre-print out: this time addressing lipid requirements in the biomass pseudoreaction, a big elephant in the room of metabolic modeling. Comments on the manuscript or SLIMEr, the companion software, are very welcomed! DD-DeCaF biorxiv.org/content/early/… github.com/SysBioChalmers…