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Today, I'm excited to present the second big chunk of my Ph.D. work. We are building a thorough assessment of the burgeoning field of gene expression forecasting. Something is deeply wrong.🧵 - Preprint: biorxiv.org/content/10.110… - Code: github.com/ekernf01/pertu…

Finished the book - highly recommended read! Personally, it's also a process of self-exploration. I'm hoping to introduce some concepts to my teaching and mentoring style. Still a lot to process, and think about reading it more carefully for a second time.

Name clash alert STAMP: 💻 article: Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP 🧪article: STAMP: Single-Cell Transcriptomics Analysis and Multimodal Profiling through Imaging

Feeling nervous doesn't mean you're unprepared. It means you care about something beyond your control. Anxiety is a caricature artist. It magnifies flaws and minimizes strengths. Gaining confidence is not about denying what could go wrong. It’s about recognizing what might go

More evidence that standard QC metrics for single-cell and spatial transcriptomics are confounded by natural biology!

If you use BioParallel, please don't use set.seed in your function for parallel computing. Please. Thank you!

An article echoing some examples mentioned in the book: science.org/content/articl…

The UAB Department of Biostatistics is hiring *multiple* open-rank tenure-track faculty members and a teaching-track assistant/associate professor. Come join our highly collaborative and collegial department! Open-rank faculty positions: uab.peopleadmin.com/postings/23346

A few of my reflections on the meeting. Im very curious to hear what you all thought - What did I miss? #biodata24

i presented our recently preprinted work #spoon at the Cold Spring Harbor Laboratory Biological Data Science conference this past week! 1/3

thank you so much to Boyi Guo 郭博逸 and Stephanie Hicks, PhD for their amazing mentorship on this project. i’m so excited to have this project out now 🤓 3/3 biorxiv.org/content/10.110…

"Yet I also know that I could have saved myself years of anxiety, disappointment, self-doubt and frustration if I had gone into academe knowing more about what I might encounter" insidehighered.com/advice/2021/11…

After going to 4 stores and asking an employee to unlock a cabinet, I bought the NOWDiagnostics | NOWDx syphilis test! It’s an exciting time to be able to buy an OTC syphilis test but inequities with access remain and it’s imperative that the STI community find new ways to expand access.

Spatial transcriptomics and sex-differential expression analyses in the human ventromedial hypothalamus and arcuate nucleus are preprinted! Come hear more Wednesday at #ACNP2024, poster W 189! Kristen R Maynard Keri Martinowich biorxiv.org/content/10.110…

My lab at Geisel School of Medicine at Dartmouth has an open postdoc position in fungal metabolomics. We will combine isotope tracing, mass spectrometry data analysis, and mathematical modeling to understand metabolic rewiring in fungal cells. Research question depends on your interest. Please RT and apply!

It's a challenging time, and I want to reflect that I'm grateful for many people for their help and support. 🙏

Job responsibility as a data scientist that holds a phd in biostatistics: copying content from xlsx to csv, and re-arrane the sheet from a irregular wide from to long form.

Overconfidence isn't rampant among experts or novices. It peaks among dilettantes. Evidence: People who are somewhat informed tend to give wrong answers instead of admitting they don't know—and lack interest in learning. A little knowledge can be more dangerous than none.