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How do you stress the importance of replicates to improve the accuracy of #eDNA sampling? Use pizza of course 🍕🍕🍕 A great talk by Nathan Griffiths #fishimp2023

Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community. #Metagenomics #MicrobiomeMockCommunity #DNAresearch academic.oup.com/dnaresearch/ar…

Visual opsin gene expression evolution in the adaptive radiation of cichlid fishes of Lake Tanganyika | Science Advances science.org/doi/10.1126/sc…

The small variant calling benchmarking initiative of @NGSCN1 is published. Thanks a lot to all the contributors and DFG public | @[email protected] for the funding. (1/x)

Snakemake has many technical benefits over Nextflow for writing bioinformatics workflows. But there is no platform that supports the language. Today we are releasing native support for Snakemake on the LatchBio Cloud. blog.latch.bio/p/native-snake…

Our CARD pilot paper with Kimberley Billingsley Cornelis Blauwendraat @BenedictPaten and many others is online! We establish a wet + dry lab protocol for single nanopore flow cell sequencing, which generates state-of-the-art SNP and SV calls + assemblies. rdcu.be/dl901

Phylociraptor - A unified computational framework for reproducible phylogenomic inference biorxiv.org/cgi/content/sh… #bioRxiv

Phylociraptor - A unified computational framework for reproducible phylogenomic inference biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Interested in #phylogenetics using whole #genome/#transcriptome/#proteome data? Christoph Hahn and I are very happy to share phylociraptor with you: It facilitates explorative and reproducible phylogenomic analyses of thousands of genes and genomes. Preprint: tinyurl.com/yc4f7v6d

Christoph Hahn Available on GitHub: github.com/reslp/phylocir…

In a post #AlphaFold world, we can use protein structures in ways we never could before. Can we build phylogenies with them? Are they any good? Yes! Foldtree (biorxiv.org/content/10.110…) surpasses traditional sequence-based methods, even for closely related proteins.👇

Indeed, thanks Philipp Resl, EcoEvoGraz, Uni Graz/University of Graz. Check it out - even if you're not interested in #phylogenetics. It's about democratizing complex computational analyses and #reproducibiltiy through #scalability and #portability (#containers)..

Structural #genome annotation with BRAKER & TSEBRA - workshop will take place on the 21st Nov. from 9am to 3pm, registration is free but capacity is limited to 35 participants - so hurry! cognitoforms.com/ERGAEuropeanRe… #training #bioinformatics #genomics #biodiversity European Reference Genome Atlas ERGA

Thrilled that our work “compleasm: a faster and more accurate reimplementation of BUSCO” is now published in Bioinformatics! 🎉 Huge thanks to our amazing lab Heng Li and to the reviewers’ valuable comments. 🙏 Journal paper: academic.oup.com/bioinformatics…

Great news from COPO! Reliably brokering sample #metadata is an essential step of the reference #genome production workflow. Congratulations on this impressive milestone 🎉 Biodiversity Genomics Europe (BGE) Earlham Institute

Embracing the command line: my unexpected career in computational biology nature.com/articles/d4158…

Evolutionary dynamics of whole-body regeneration across planarian flatworms nature.com/articles/s4155…

Our preprint is out! We hacked the Oxford Nanopore sequencer to read amino acids and PTMs along protein strands. This opens up the possibility for barcode sequencing at the protein level for highly multiplexed assays, PTM monitoring, and protein identification! biorxiv.org/content/10.110…

Yesterday we released our preprint showing how a Oxford Nanopore array morphs into a protein sequencer... Achieving LONG reads (hundreds of amino acids) and the capability to re-read individual molecules multiple times, all thanks to a protein-processive molecular motor.

nature.com/articles/s4158…