Let's face it when dealing with cell segmentation we never have enough time to check if it is correct. #CellACDC can make your life easier. We developed many smart algorithms, including simple and intuitive annotations of the cell cycle stage

#PhDHatAlert 👨‍🎓 Congratulations to Ciro Salinno (IDR, Heiko Lickert) for successfully defending his #PhD thesis today! 👏🥳 We are very proud of you and wish you all the best for your future! 🙌

A tabula rasa no longer… New Tabula Sapiens #SingleCell database for most adult human organs (except the brain) from Stephen Quake and the consortium Chan Zuckerberg Biohub Network. A useful reference atlas for many of us. biorxiv.org/content/10.110…

Such an impressive work! Congratulations to the authors 🍾

Migrating cell leaves a trail: The migrasome is an organelle produced by migrating cells. As cells migrate, they leave long and thin retraction fibers #biology

New paper from our lab! Live-Cell imaging + mathematical modeling = super cool! Check it out 😎

Very proud of our study published in NEJM. 100% clinical complete response with dostarlimab alone in mismatch repair-deficient locally advanced #RectalCancer. No radiation or surgery! ASCO #ASCO22 Memorial Sloan Kettering Cancer Center nejm.org/doi/full/10.10…

And stay tuned for some very useful features that will be released soon!

What's your favorite data visualization software/package/tool? #Statistics #bioimageanalysis #Bioinformatics 🤓

So happy to see this work finally out! Congrats Mostafa Bakhti and Aimée Bastidas Ponce! Go read it, folks! 🤓

Cell-ACDC for analysis of live-cell imaging data is now out: bmcbiol.biomedcentral.com/articles/10.11… We hope it will be useful for many! Stay tuned for updates and let us know if you are missing something for your application! Francesco Padovani Benedikt Mairhörmann Jette Lengefeld @Interactome

Very happy to share our latest publication, fresh out in nature, defining stem-like #TPEX cells, crucial for maintaining T cell responses to chronic viral infections and fueling therapeutic immune reinvigoration during checkpoint inhibition: nature.com/articles/s4158…

Italy 2022

Scirpy has the best documentation I have seen in a long time! The glossary and IR model are absolutely amazing

Science Seminar with @VeitBuchholz on Oct 13th at 1pm BST: The smallest unit: Understanding immunological memory and exhaustion through fate-mapping of single lymphocytes. Please register at eventbrite.co.uk/e/cardiff-univ… CU BLS Research TU München

Note to myself: never move to the US.

Congratulations Karin Hrovatin ! What a wonderful job! Happy to have contributed to this fantastic resource with three of my scRNAseq dataset generated during my PhD time. Check the preprint out 👓

Do you want to try TAPIR, the new tracker by @DeepMind, on microscopy data? We just released it in our #BioImageAnalysis software #CellACDC (no code required) 🥳! At the moment only if you install from source, but it will be released on PyPi soon. Let's see what it is capable of:

You also canNOT wait to try out #Cellpose 3.0, right? We've got you covered! We just added it to our #BioImageAnalysis software #CellACDC where you can choose which denoising model to run before segmentation and test the denoising in real time! Kurt Schmoller 🧵👇

SpotMAX, our software tool for analysing multi-dimensional microscopy data, is finally out! 🎉 And conveniently, I just presented it at the #I2K conference 😀 A multi-year-long effort of many great collaborators and users. But what can SpotMAX do? A small thread