Delighted to share my first preprint!

QuantiFish: our new tools to quantify dissemination of pathology in #zebrafish Authors: David Stirling @DrElizaGil Phil Elks @Myco_Traps Mahdad Noursadeghi biorxiv.org/content/10.110…

Visit IDEA Bio-Medical at #ELMI2019 in Brno, Czech Republic! Visit Booth #36 to experience our novel Deep Learning-powered image analysis tool for Zebrafish high-content screening! idea-bio.com/visit-i-us-at-… #hcs #zebrafish #artificialintelligence #deeplearning #microscopy

Verifying myself: I am dstirling on Keybase.io. uVcy98h7yuuTmFrfrk1EECSlmatBs6vi1flc / keybase.io/dstirling/sigs…

The Carpenter Lab @ the Broad Institute (Cambridge, MA, US) have a new open slot in the Postdoctoral Training Program in Bioimage Analysis. We're seeking bright, organized biological microscopists who want to learn to collaboratively make cutting-edge image analysis workflows.

Delighted our paper on analysis tools to quantify dissemination of pathology in #zebrafish is out in Scientific Reports! Authors: David Stirling Oniz Suleyman @DrElizaGil Phil Elks Vincenzo Torraca Mahdad Noursadeghi nature.com/articles/s4159…

Our paper on QuantiFish - a #zebrafish fluorescence analysis tool - has been published in Scientific Reports! Many thanks to everyone involved, especially Gillian Tomlinson. nature.com/articles/s4159…

Yes, everyone, there is indeed a biological process called VOMOCYTOSIS 🤮 #HIV #cryptococcus Out now in PLOS Pathogens and 👏 to Lucy Bell David Stirling Mahdad Noursadeghi Leanne Taylor-Smith Dalan Bailey & Robin May - is now over on BLUESKY instead.

Interested in applying your software engineering skills to help biologists discover new medicines in a non-profit, open-source environment? If you have machine learning expertise and strong programming skills, please consider working with my awesome team! broad.io/2020_SoftwareE…

ANNOUNCEMENT- This Friday 3/27 at noon EDT, we'll hosting a live one hour CellProfiler tutorial on Zoom, open to the first 200 people. From 9-12 and 1-5pm, we will be hosting 30 minute office hour slots. These are for folks with CellProfiler experience and SPECIFIC questions.

Hello #bioimageanalysis community! CellProfiler office hours are back Fri. April 10th- 9am-12pm and 1pm-5pm EDT - 30 minute slots for specific questions. broad.io/imagingofficeh… We'll also have a streaming intro to CellProfiler-Analyst at 12pm youtu.be/1D1CrJeZ_a0

It'd be very helpful if those of you who do image analysis could take a look at this survey we're doing!

today Computer Vision and Advanced Python programming with Allen Goodman Beth Cimini 🔬💻 📊 and David Stirling 15h30-17h00 CEST (Brussels Time) Register: docs.google.com/forms/d/e/1FAI… @NEUBIAS_COST #NeubiasAcademy

Today we're releasing CellProfiler 4.0! Thanks to everyone who contributed, we've added some nice things! #microscopy #bioimageanalysis carpenterlab.broadinstitute.org/blog/cellprofi…

If you're interested in David Stirling 's poster on the new CellProfiler release (also a Center for Open Bioimage Analysis project), you can find it here - bitly.com/2ZG5R32

There is SO MUCH going on with the CellProfiler / Center for Open Bioimage Analysis team these days, so if you need a brief interruption from the political craziness, please let me tell you all about it! (1/x)

Trying to get started using CellProfiler from the command line? Check out our blog post here, or head on over to the forum to discuss! #Bioimageanalysis carpenterlab.broadinstitute.org/blog/getting-s… forum.image.sc/t/getting-star…

We’re delighted to release Piximi Annotator (piximi.github.io/annotator/), a new image annotation tool that we built to be easily accessible, easy to use, yet with a full complement of annotation tools to allow for specific, refined annotations.

Glencoe Software is at #SBI2 this week. Check out Poster 11 to learn more about how we used #OMENGFF and #OMERO to achieve scalable, cloud-based image analysis with #CellProfiler.