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The three categories of metadata; experimental, microscopy and analysis. All need to be in place for Findable, Reproducible, Interoperable and Reusable (FAIR) data. Canada does it all on a National #OMERO platform. #elmi2023

Thomas Zober from ⁦Münster untangles the data tornado by automated image analysis through a marriage of OMERO and ⁦⁦CellProfiler⁩ facilitated by ⁦Project Jupyter⁩ notebooks. #ELMI2023

Ander Astudillj presents YODA:a National initiative to share data in a user friendly manner. The model segments metadata in three categories: Audit, Descriptive, and System. #ELMI2023

Observation: Chan Zuckerberg Initiative is by far the most thanked funding source thus far at the #ELMI2023 core facility 0-day session. Great to see support for the supporters of science.

Today I felt again that some scientists still consider other scientists who thrive on developing tools and methods to enable new discoveries (like me) as a "lower class" of scientists... My personal guess is that this is more frequent in biology than in physics or chemistry.

Great keynote delivered by Antoni von Leeuwenhoek kicking off #ELMI2023.

Loops in loops, it’s loops all the way down. Jan Ellenberg dazzles #ELMI2023 with 3D DNA tracking revealing the in situ architecture of mitotic chromosomes.

Session 3 of #ELMI2023 starts on time with Olivier Pertz untangling ERK-signalling with optogenetic activation and dynamic imaging, allowing for data-driven discovery of time series phenotypes.

Bowling alleys and technology minded problem solvers are a match made in #ELMI2023 heaven.

Thanks everyone involved in #ELMI2023 I solved problems, made new friends and even learned how to catch sea bass from a local.

Spatial information matters. Go see your local microscopist.

Immune cells hunting down bacteria. 24/7 battle: #biology

How to 3D-print any microfluidic device or stamp for micropatterning? Quick iteration times, from design idea to seeding cells in one day, no clean room required. Short thread on a method we’re working on in the lab!

I’ll be there, will you?

This looks like a completely novel problem. You have the structure, but not the sequence. How could you identify a protein from structure alone?

Was so much fun to meet old and new friends at the Alp Sellamatt retreat the last few days! And the first proper group trip in a long time. Thanks a lot for organizing Dr. Bärbel Stecher and colleagues. Maier_Lab @PascaleVonaesch, @Diard_Lab, Sigi Hapfelmeier, Benjamin Misselwitz, #HardtLab

With important contributions from Mast Cell & Lung Immunology Reseach lab, Fällman Lab, and Pejler Lab, Petra Geiser, Maria Letizia Di Martino, Erika, Jens Eriksson.

Do you want to export Timelapse moves directly from #imagej ? I made an ugly hacky Jython plugin to export RGB-stacks as .mp4 for web and PowerPoint github.com/Oftatkofta/Ima…