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🍝 CARBonAra is on the EPFL Life Sciences news! I am looking forward to seeing other people try our method! actu.epfl.ch/news/a-new-ai-…

Yes, we finally cracked it at high resolution. Wonderful collaboration. Kudos to Jana and Ioan and the team!

AlphaFold3 reproduced and params/code released. 🤩

The results are out! Damn 153 characterized but only 5 bind coming just from 3 groups/persons!

Wow, this is really unexpected! Designs were done together with Lennart Nickel in Bruno Correia lab. Our pipeline will be fully open source and preprint online hopefully next week 🙂

We present EnzymeFlow for generating catalytic pockets conditioned on a reaction - A dataset of reactions and pockets - A flow-matching model that conditions on the reaction and leverages related sequences and reactions Great work by Will Hua and others!!

Last week to apply ;)

BREAKING NEWS The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”

Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from Microsoft Research AI for Science. #ML #AI #NeuralNetworks #Biology #AI4Science biorxiv.org/content/10.110…

Inspired by Simon Duerr at ERC'24 I built and deployed our sequence redesign model called CARBonAra on The Hugging Face. The model is aware of any biomolecular context and performs on par with ProteinMPNN (paper) Lucien Krapp Matteo Dal Peraro Check it out here: huggingface.co/spaces/LBM-EPF…

Our article on molecularwebxr is out, showing how to use it for engaging discussions, outreach and education in immersive virtual and augmented reality that runs in all devices @epfl sciencedirect.com/science/articl…

The BioEmu-1 model and inference code are now public under MIT license!!! Please go ahead, play with it and let us know if there are issues. github.com/microsoft/bioe…

🚨 Check out DrugFlow, our new generative model for structure-based drug design. DrugFlow provides an atom-level confidence score for each designed molecule, and can adjust molecular size on the fly! Additional details in thread 🧵 #ICLR2025

📢 Our new preprint is out on bioRxiv! We introduce RAG-ESM, a retrieval-augmented framework that improves pretrained protein language models like ESM2 by making them homology-aware with minimal additional training costs. 💻 github.com/Bitbol-Lab/rag… 🔗 doi.org/10.1101/2025.0… 1/7

Excited to be at #ICLR2025 and happy to chat about ML and drug discovery! 🇸🇬 Come find me at one of our posters or feel free to reach out directly! 1. DrugFlow: #9 Thu 24/04 10am 2. SynFlowNet: #15 Fri 25/04 10am 3. LDDM: GEMBio Workshop 27/04 4. LatentFrag: #AI4MAT 28/04

We'll be presenting the poster tomorrow (Thu 24/04) at 10am #ICLR2025. Please come and say hi :) iclr.cc/virtual/2025/p… Ilia Igashov Adrian Dobbelstein

Excited to be at ICLR 2026 this week! I’ll be presenting our latest work at the MLGenX Workshop @ ICLR 2024 workshop on Sunday, details in the post below. (And yes, I’m on the job market, come say hi!)

Introducing BenchBB and the community paper of the Protein Design Competition 🎉 We wrote a community paper about our Protein Design Competition, teaming up with your favourite protein designers from both rounds. Excited to announce that this is now on Biorxiv 🙌

Pre-announcement: MARTINI tutorial workshop, August 11-15th 2025 in Groningen, The Netherlands !! Learn basic and advanced Martini from the cocktail masters themselves. Registration will open soon.