Congratulations to Katja, DK, Luke, Kerry and the whole HuRI team!

Cupcake now can color PacBio Iso-Seq BED files by their abundances! Thanks Gloria Sheynkman for the original code. Tutorial here: github.com/Magdoll/cDNA_C…

So excited to share our preprint, demonstrating the use of long-read technology to analyze genomes of single human cells! The result of heavy development work by Joanna Hård @Jeff_Mold Jakob Michaelsson NGI Sweden SciLifeLab @samplix and others.🧵👇 biorxiv.org/cgi/content/sh…

Want to know what the cutting edge PacBio Iso-Seq researchers are working on? Want to learn how to use Iso-Seq, SQANTI3, tappAS for differential isoform analysis? Come join the first edition of Iso-Seq Social Club 6/24! events.pacb.com/iso-seq-social…

The Long-read RNAseq Genome Annotation Assessment Project #LRGASP challenge has started. PacBio Oxford Nanopore Illumina data is now available. Challenge ends Sep 1 2021. Join this community effort & submit your predictions of transcript models/quantification. bit.ly/3eEhPCw

#LRGASP Challenge 1: full-length transcript reconstruction using a high-quality, annotated reference genome. Multiple submissions of predicted transcript models are possible for each participant. Learn more about Challenge 1 in this thread. (1/10) GencodeGenes Brooks Lab

Excited for @ErinJeffery3's talk today at #ASMS2021

Glad to see this PacBio Iso-Seq paper come out! Congrats Szi Kay, Aaron Jeffries , Gloria Sheynkman and others! cell.com/cell-reports/f…

1/ What happens when you have full-length PacBio transcripts? You can predict full-length ORFs! Different isoforms make different proteins (or no proteins)

Miller, Gloria Sheynkman & co present a proteogenomics approach using long-read RNA-seq and mass spectrometry, to identify protein isoforms. They introduce a new classification system, SQANTI protein, for characterizing novel protein isoforms. genomebiology.biomedcentral.com/articles/10.11…

Excited to work with Gloria Sheynkman studying the functional role of alternative splicing.

Thank you @ErinJeffery3 for all your work on this

We are pleased to announce that our second accepted-in-principle Stage 1 Registered Report proposal, from the #LRGASP consortium, is now available to interested readers: springernature.figshare.com/registered-rep… GencodeGenes Brooks Lab Ali Mortazavi AnaConesa Gloria Sheynkman @ChrisVollmers

We are looking forward to seeing many of you next week at #ASMS2022 in Minneapolis! Join us after the Monday evening workshops for a FeMS Gap Hour Reception sponsored by Agilent Technologies for networking with a toast to @ErinBakerNCSU for the Biemann Medal. All are welcome, see you there!

Looking forward to attending ASMS this year with @ErinJeffery3! #ASMS2022

UVA Creates New Tool To Advance Biomedical Research and Fight Diseases Gloria Sheynkman The Sheynkman Lab UVA Health shar.es/afqixI #research