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CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

I am delighted to share my latest preprint, a work co-supervised with Emmanuelle Le Chatelier.

A new preprint is available! Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions!

Very happy to see our work out in preprint. Try it out, hope you'll like it

Rendez-vous sur linktr.ee/INRAE.MaIAGE pour continuer à nous suivre !

Ali-U-Net: A Convolutional Transformer Neural Net for Multiple Sequence Alignment of DNA Sequences. A proof of concept biorxiv.org/content/10.110… #biorxiv_bioinfo

GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph biorxiv.org/content/10.110… #biorxiv_bioinfo

ChromBERT: Learning interpretable representation for context-specific transcription regulatory networks using a foundation model biorxiv.org/content/10.110…

BioToken and BioFM – Biologically-Informed Tokenization Enables Accurate and Efficient Genomic Foundation Models biorxiv.org/content/10.110…