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#papersofthemonth PLOS Genetics : The bacterial genetic determinants of #Ecoli capacity to cause #bloodstreamInfections in humans Judit Burgaya Guilhem ROYER Victoire de Lastours erick.denamur Marco Galardini François Blanquart doi.org/10.1371/journa…

Even though the lab is focused on bacterial pathogens, we (me and Gabriel Innocenti) took a look at the “2020 main character” pathogen, SARS-CoV-2, and just put out a preprint on the topic of real-time identification of epistatic interactions. biorxiv.org/content/10.110…

Claudine Medigue, David Vallenet and Alexandra Calteau presented 20 years of activity of the #MicroScope_platform #MicroScope20years

Our manuscript describing our tool panfeed has now been published in Microbial Genomics (Microbiology Society): microbiologyresearch.org/content/journa… Head over to our lab website for a quick explainer: microbial-pangenomes-lab.org/2023/11/09/Mul…

We're offering an internship to work on new methods for microbial #pangenomics. labgem.genoscope.cns.fr/2023/11/15/sta… Come and work with us!

Today LABGeM @genolabgem.bsky.social is going to a special event with the PPanGGoLiN team Adelme Bazin Guillaume GAUTREAU Jérôme Arnoux @jpjarnoux.bsky.social #pangenome Institut de Biologie François Jacob GENOSCOPE/UMR Genomique Metabolique IFB_Bioinformatique

PPanGGOLiN is nominated for the prize « Science ouverte du logiciel libre de la recherche » Guillaume GAUTREAU Adelme Bazin Jérôme Arnoux @jpjarnoux.bsky.social @j_main_guy David Vallenet et Alexandra Calteau Institut de Biologie François Jacob GENOSCOPE/UMR Genomique Metabolique IFB_Bioinformatique

"S'il faut supprimer tous les droits des français pour les protéger, je n'hésiterais pas UNE seconde !"

De l'ordre et du désordre ! Le Pr Erick Denamur nous raconte l'histoire évolutive d'Escherichia coli. Magnifique conférence introductive #RICAI 2023. IAME Research Center

After a year of development, PPanGGOLiN 2.0.0 is now out in the wild !! github.com/labgem/PPanGGO… Its major new features include a way to integrate any annotation from any tool in the graph, an improved data structure to store your pangenomes, and a brand new documentation !

Adelme Bazin If you would like to contribute to the development of PPanGGOLiN as an engineer, post-doc or PhD student contact me by DM. Several positions will be open shortly LABGeM @genolabgem.bsky.social

We are hiring a postdoctoral researcher in bacterial genomics to study commensal E. coli epidemiology and evolution in an ERC-funded project. Please retweet!

Please Retweet and/or consider joining our unit IAME Research Center ! Do not hesitate to contact us if you need information about the application and selection process.

New preprint now online 🥳 We have developed a pipeline to perform bacterial GWAS from a set of assemblies and annotations, with one or multiple phenotypes as targets.

Mon premier article en droit de la santé est maintenant en ligne! Face à un divulgiciel, faut-il ou non payer la rançon pour sécuriser les données personnelles des patients ? Je discute du cadre juridique à prendre en compte pour répondre à l'attaque. cairn.info/revue-droit-sa…

Je propose une offre de stage à INRAE MaIAGE pour modéliser les interactions microbiennes et métaboliques dans la dynamique de fermentation de jus de légumes Plus d'information : jobs.inrae.fr/ot-23005

Excited to share BakRep - our latest work published in Microbiology Society #MGen >661,000 bacterial genomes, uniformly characterized & annotated, enriched with metadata, accessible via a flexible search engine doi.org/10.1099/mgen.0… 👇 1/7

CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Check out our new paper on molecular characterization of RSV infections in elderly patients during the 2023/2024 season in the era of nirsevimab introduction, just published in JID pubmed.ncbi.nlm.nih.gov/39895281/