Not the official Science Advances cover of this month, but you can still find it in the current issue! Check our latest paper where we used 3D-CODA to design assembloids that mimic the complexity of human fallopian tubes. Paper:science.org/doi/10.1126/sc…

In our recent paper on CODA-map guided design of assemblies for human fallopian tubes, we recapitulate the cilia-driven motion of oocytes. That was really cool to see under the microscope. More here: science.org/doi/10.1126/sc…

Always special to present my group’s work in Portugal, here at the Champalimaud. I come to Lisbon often as my wife is Portuguese. Many of my PhD and master’s students - past and present - are Portuguese.

4th edition of the HOPTEC webinar series (Oct 29th, 15h PT time/10am US time)! Latest research updates on alpha-particle radiotherapies with Prof. Sofou (Johns Hopkins University) and tumor-targeting peptides with Prof. Bernardes (Instituto Superior Técnico). Register: tinyurl.com/HOPTEC

Excited to share the speakers for the next HOPTEC webinar series (Oct 29th, 3pm PT time/10AM US time)! >Join us to learn more about the state-of-the-art research on alpha-particle radiotherapies, and tumor-targeting peptides with Prof. Sofou and Prof. Bernardes.

The next HOPTEC seminar is happening next week! Don’t miss out on this chance to connect with engineers from Instituto Superior Técnico and Johns Hopkins Engineering 🌎

4th edition of the HOPTEC webinar series (Oct 29th, 15h PT time/11am US time)! Exciting updates on alpha-particle radiotherapies with Prof. Sofou (Johns Hopkins University) and tumor-targeting peptides with Prof. Bernardes (Instituto Superior Técnico). Register: tinyurl.com/HOPTEC

Don't miss out tomorrow Oct 29th, 15h PT time/11AM US time!

HOPTEC Seminar | Tuesday Jan 28th | 15h GMT🌐 Don’t miss this week’s seminar on Tuesday! Register 👉docs.google.com/forms/d/e/1FAI…

We are beyond excited to announce the final panel for the 8th edition of the HOPTEC Webinar Series featuring guest speakers 𝗕𝗿𝗲𝗻𝗱𝗼𝗻 𝗗𝗮𝘃𝗶𝘀 and 𝗦𝗶𝗺ã𝗼 𝗥𝗼𝗰𝗵𝗮! 📅Date: 6th of May 2025 ⏰Time: 16H GMT - 11 AM EST 🔗Register here: forms.gle/cKMwGiRQJRLL7J…

No words needed! #neubiaspasteur2025 Ignacio Arganda-Carreras Daniel Franco-Barranco BiaPy Thank you Joanna Pylvänäinen !

We introduce InterpolAI, an optical flow-based AI model to enhance 3D imaging (MRI, CODA, ssTEM, light sheet) Read about it here in our new NM paper: nature.com/articles/s4159…

To fix input images in a stack for 3D imaging, use InterpolAI. InterpolAI removes tissue tears and stitching + photobleaching artifacts in stacks of ssTEM, MRI, light-sheet, or histological images (CODA). Read it here: nature.com/articles/s4159… GitHub: github.com/sjoshi17jhu/In…

It is very hard to avoid tissue tear when sectioning brain samples for ssTEM imaging. The majority of sections have such defects. No worry, we can fix these defects using InterpolAI, as shown in our recent Nature Methods paper: nature.com/articles/s4159…

Segment any MRI, CTscan, histology image using CODA using CODAvision. CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports. More here: biorxiv.org/content/10.110…

3D spatial multi-omic assessment of tumors is not a luxury, it is necessary. 2D assessments of tumors are simply insufficient. The whole field of spatial omics needs to move to 3D. Read this work here: cell.com/cell-reports-m…

A fully functional organoid has to have the right form. We have developed a multi-compartment assembloid of a human organ, whose design converges iteratively towards the 3D map of that organ via CODA. Proof of principle for the human fallopian tube: science.org/doi/full/10.11…

In our new paper, we produced a 3D single-cell reference map to guide the design and validation of a new multi-compartment assembloid that mimics the function and architecture of the human endometrial tissue, exhibiting stromal decidualization. More here: biorxiv.org/content/10.110…

I am honored to be selected as one of the 𝗦𝗶𝗲𝗯𝗲𝗹 𝗦𝗰𝗵𝗼𝗹𝗮𝗿𝘀 𝗖𝗹𝗮𝘀𝘀 𝗼𝗳 𝟮𝟬𝟮𝟲 at Johns Hopkins University. I'm immensely grateful to my mentors at Hopkins, including Denis Wirtz, sashank reddy and Ashley Kiemen. Read more: hub.jhu.edu/2025/10/13/joh…