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Read our latest #research on GPT-4 for cell type annotation #SingleCell, published in Nature Methods by Springer Nature. w/zhicheng ji Paper: rdcu.be/dCnCa Software: github.com/Winnie09/GPTCe… ColumbiaPublicHealth

Grateful to have had the opportunity to discuss my research journey in a recent Q&A with Columbia UniversitySPH 🙏. It's a reflection of the collective efforts of my advisors, collaborators, students, and the supportive academic community at @Columbia 🎉.

Exciting to see the first @NVIDIA DGX H200 delivered to OpenAI Meanwhile, in our department, we're still eagerly awaiting our order of H100 GPUs from last summer, now delayed for the third time. We understand we're smaller buyers, but we're hopeful to see some progress soon. 🙏

People with 2 copies of APOE4 were known to have a high risk of #Alzheimers. Today that changed to nearly 100% full penetrance NATURE.med nature.com/articles/s4159…

GoT-ChA! I am thrilled to announce that our paper "Mapping Genotypes to Chromatin Accessibility Profiles in Single Cells" is now out in nature !! 👩‍🔬👨‍🔬🧬If you want to link somatic mutations to epigenetic changes directly in patient samples: nature.com/articles/s4158… 👇🧵

Had an amazing time at the CompBio Workshop The University of Chicago and TTIC! Grateful for the invitation to share my work and for the inspiring discussions with brilliant colleagues. Looking forward to more collaborations and discoveries in this exciting field! #CompBio #AcademicLife

We've noticed this happening at Columbia ColumbiaPublicHealth

Stephanie’s group is hiring! This is a fantastic opportunity for getting postdoc training. Check it out~

It truly is!

Excited to read Nature Methods comment on “Unlocking the Power of Spatial Omics with AI” from Mingyao Li, Kyle Coleman and Amelia Schroeder nature.com/articles/s4159…… Very inspiring!

Shame on the MIT Media Lab Professor. Racist activities shouldn't have their places at a top AI conference NeurIPS Conference. Imagine changing "Chinese" to other races or ethic groups, she will probably be fired by Massachusetts Institute of Technology (MIT). This is not for Chinese. Who knows who will be the next victim?

As alumni I'm sad to see a mit professor publicly shaming chinese students in a top conference without citing credible sources. The more serious question is: did she make it up? I dont see any sensible person would make such a confession. Massachusetts Institute of Technology (MIT) NeurIPS Conference

Read our latest #research on GPT-4 for generating programming code, published in Advanced Science by Wiley. w/ zhicheng ji Paper: onlinelibrary.wiley.com/doi/10.1002/ad… ColumbiaPublicHealth Columbia University

Exciting collaboration with Christina Jackson, MD, Drew Pardoll, Chetan Bettegowda, Vasan Yegnasubramani, and many others - now published in Science! Grateful for the contributions of our current and past group members: Runzhe Li, zhicheng ji, Wenpin Hou, and Wentao Zhan. #TeamScience

Super excited to share our latest work in collaboration with the groups of yuyin zhou & zhicheng ji ! 🎉 🧬 MethylProphet – a gene-guided Transformer for DNA methylation inference at unmeasured CpGs. 🧬 EpiFoundation – a foundation model for scATAC-seq. Check them out! 🔬👇

MethylProphet: biorxiv.org/content/10.110… EpiFoundation: biorxiv.org/content/10.110…

🚀 Excited to share that our project TRANSFORM-AD has been selected for the @ColumbiaDSI 2025 Seed Fund Program! 🎉 With YING WEI & Dr. James Noble, we’re developing a transformer-based #AI platform to forecast #Alzheimer’s disease progression and personalize interventions.🔬🧠

At Dean Fried’s exit interview now. Dean Fried is sharing reflections on her career, discuss public health leadership today, and offer thoughts at multiple aspects.

My amazing PhD student Wendy Yang Muyu "Wendy" Yang is graduating this summer & seeking industry R&D roles! She's published in ISMB, Nature Methods, and interned at Genentech. Strong in #AI/#ML for gene regulation. Looking for top AI+bio talent? Contact Wendy: [email protected]