We are very excited to announce the 1st CENTURI - Turing Centre for Living Systems Hackathon for Quantitative Biology on June 24th-26th in Marseille! A fun weekend in perspective w/ projects ranging from imaging to robotics at the scenic CIRM. Registrations and infos: tinyurl.com/5n6psa2r. Happy Hacking!

📢 Wednesday 09/02 - 16:00 UK - TLM Online Seminar Series 2021-2022 - 7th Talk 📢 "A Statistical (Physics) view of Organismal Development" Prof. Madhav Mani Govt. Madhav Science College, Ujjain Northwestern Please RT & join our 📧to attend: lists.cam.ac.uk/sympa/subscrib…

Last day to register for the 2023 CENTURI HACKATHON! 6 projects focusing on data-driven innovations for Life Sciences: computer vision, smart non-invasive, Multi-modal data analysis... Details here centuri-livingsystems.org/hackathon-2023/ and application form: t.ly/Sc9RI

The u-track3D paper is published! Lots of fun data gathered in this review process. We showed that UT3D outperforms DL in the majority of scenarios, but more importantly, we demonstrated exactly what is our trackability score measuring. 2 notes to follow. t.ly/J9n_v

More ‘23 recap: my group’s 1st paper was released this year ! Here, we detect segmentation errors made by DL tools (Stardist, CellPose) w/o ground truth by analyzing the consistency of cell dynamics. Congrats Jules Vanaret for the paper & cover :) ieeexplore.ieee.org/document/10123…

New preprint: We have developed an integrated pipeline to i) image gastruloids in toto with dual-view 2-photon🔬, ii) quantitatify cell and tissue-scale patterns of gene expression and morphometric features, iii) interact with the data in napari🔬. biorxiv.org/content/10.110…

🚨📢Our paper on imaging, segmenting, visualising and measuring patterns in gastruloids across spatial scales w/ napari🔬 is out‼️ An project led by Alice Gros, Jules Vanaret, Valentin Dunsing-Eichenauer et al.🤓 A collab. between Lenne Lab, Philippe Roudot's and our lab. ⬇️Link⬇️

#Gastruloids have many uses as #models for: early mammalian development, #SelfOrganization, mapping signalling/gene expression, morphogenesis. Here Lenne Lab use’m to develop gral tools to image gene/protein expression at diff scales biorxiv.org/content/10.110… #InNumbersWeTrust