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A Comparison of Nanopore Data Types, Basecalling, and Assembly Algorithms: Whole Plant Genome Assembly and Methylation Analysis from ... biorxiv.org/cgi/content/sh… #biorxiv_genomic

🎉 ATLASea Milestone✅ We’re thrilled to announce that ATLASea has already collected over 1⃣0⃣0⃣0⃣ species across 5 sampling expeditions to the Mediterranean, Caribbean, South Pacific with Muséum national d'Histoire naturelle, English Channel with Ifremer 🌊 and Dinard in Brittany with all partners!

An international team of researchers, led by the CNRS 🌍 and the Institut de Biologie François Jacob and funded by France Génomique, analyzed 60 new genomes of brown algae. doi.org/10.1016/j.cell…

🎥 Plongez au cœur de la science avec “Les pêcheurs d’ADN” ! Découvrez comment l’équipe d’ATLASea a prélevé les échantillons des espèces marines lors de la mission à Dinard de cet été pour révéler la biodiversité cachée des océans. 🌊🔬 ➡️ À voir ici : lejournal.cnrs.fr/videos/les-pec…

📢 The ATLASea Scientific Advisory Board meeting took place at Maison de l'Océan in Paris over the past 2 days. A big thank you to all SAB members for their active participation, valuable insights, and dedication to advancing the project and to MuséeOcéanographique for the meeting room!

The latest hifiasm can directly assemble standard Oxford Nanopore simplex R10 reads, without HERRO correction or other preprocessing, to phased contigs of contiguity comparable to HiFi assembly. Like before, you can further add ultra-long, Hi-C or trio data for better assembly.

Join the ATLASea Species Ambassadors Initiative! ATLASea is calling researchers to become Species Ambassadors and help shape the future of marine genomics while advancing our understanding of biodiversity. 👉Learn more and get started here: atlasea.fr/en/species-amb… #MarineGenomics

The Datasaurus Dozen is a collection of thirteen datasets that, despite having nearly identical summary statistics—such as mean, variance, and correlation—exhibit vastly different distributions when visualized. This underscores the critical importance of graphing data to uncover

#ResultatScientifique🔎 | Une plongée dans les génomes d’algues brunes révèle les secrets de leur évolution 🤝 CNRS 🌍 CNRS Bretagne et Pays de la Loire Sorbonne Université CEA Université Évry Paris-Saclay Station Biologique de Roscoff ✍️ J Mark Cock & France Denoeud 📕 Cell | buff.ly/4fVXBkT buff.ly/4fXc13X

#EnDirectDesLabos🔎 Nouvelles actualités scientifiques 🔬, création de laboratoires 🧑‍🔬annonce de prix 🥇... Retrouvez toutes les deux semaines les informations issues des laboratoires du CNRS 🌍 👉 cnrs.fr/endirectdeslab…

🌟 “Small steps lead to big results!” The first 20 genomes sequenced by ATLASea and sampled in Leucate, Roscoff & Marseille are now published and available on our data portal. A milestone in our journey to explore marine biodiversity! Explore the data: portal.atlasea.fr/home/

Our hitchhiking paper is out at genomebiology.biomedcentral.com/articles/10.11… - a great collaborative effort with Prasadms Josipa Lipovac, FilipTomas13 JJ Liu. Briefly, Oxford Nanopore is enough for high-quality human genomes. Recently, HERRO showed that even UL is sufficient. 1/3

For those working with Hi-C data and the Arima Genomics workflow, we have rewritten the Arima tools using htslib to speed up the process. Any feedback is welcome: github.com/Genoscope-LBGB…

New preprint on hifiasm (ONT)! We can now achieve near T2T human genome assembly using only ONT Simplex reads—in just half a day, with or without ultra-long sequencing. biorxiv.org/content/10.110…

Miniprot-0.15 released with minor improvement to alignment around tandem gene duplications. github.com/lh3/miniprot/r…