
Josh Southern
@joshsouthern13
PhD student @ImperialCollege. Ex ML engineer @ Limbic AI #graphs #AI4Health
ID: 1163470978636234753
http://jks17.github.io 19-08-2019 15:21:22
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Taking a fresh look at an old challenge: therapeutic lead discovery 💊 Our Portal blog dives into how our causally-inspired GNN model, PDGrapher, changes up the game by predicting therapeutic agents directly from phenotypic data🧬 work with Marinka Zitnik and Michael Bronstein


protein design is getting weird ... and increasingly functional ! These are very weird designs ! biorxiv.org/content/10.110… fun collaboration with Karla Castro Joseph Watson Jue Wang Institute for Protein Design


Exploring “dark-matter” protein folds using deep learning Cell Systems • Introducing Genesis VAE, a convolutional variational autoencoder that transforms low-resolution protein fold sketches into designable, stable 3D models. • Genesis VAE enables rapid exploration of


Great to make the journey out to Denver to present our recent work on genomic-driven ML interventions for #PCOS at #ASRM2024 Josh Southern ChiomaIzzi Waljit Dhillo Ali Abbara Metabolism, Digestion & Reproduction


I am very happy to be selected as a top reviewer for #neurips2024 but still shocked by the lack of resources online on how to write one. Congrats also to old lab friends Giorgos Bouritsas (@[email protected]) Fabrizio Frasca who I also noticed on the list!

A postdoc position is available in my group at Harvard Harvard SEAS to perform research at the intersection of Geometry & Machine Learning. Research interests include Representation Learning, Learning on Graphs & Manifolds, and applications in the Sciences. Details here:


🌟 GLOW is coming back in December with amazing speakers: Emily Jin and Josh Southern! 🗓️ Dec 18th @ 17 CET on Zoom, don't miss that! 🌐 Find more here: sites.google.com/view/graph-lea…









Knowledge Graph Foundation Models (KGFMs) are at the frontier of graph learning - but we didn’t have a principled understanding of what we can (or can’t) do with them. Now we do! 💡🚀 🧵 with Pablo Barcelo, İsmail İlkan Ceylan, Michael Bronstein, Michael Galkin, Juan Reutter, Miguel


New preprint! 🚨 We scale equilibrium sampling to hexapeptide (in cartesian coordinates!) with Sequential Boltzmann generators! 📈 🤯 Work with Joey Bose, Chen Lin, Leon Klein, Michael Bronstein and Alex Tong Thread 🧵 1/11
