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A zebrafish gene for Ensembl #GeneOfTheWeek, what a great idea! rerea has low expression levels, but the highest is in embryo and in pharyngeal gills, consistent with its know role in development: bgee.org/?page=gene&gen… zfin.org/ZDB-GENE-06071… ZFIN doi.org/10.1002/dvdy.2…

Enrichment of variants involved in depression in the brain replicated with Bgee database #TopAnat bgee.org/?page=top_anat…

CD4 #GeneOfTheWeek Ensembl is highly expressed in leukocytes and thymus, in human and in mouse. Magnificent consistency of UniProt annotations and our predictions :) uniprot.org/uniprot/P01730… bgee.org/?page=gene&gen… uniprot.org/uniprot/P06332… bgee.org/?page=gene&gen…

NAT2 is associated with fecal metabolic traits, and "expression is highest in the liver, then in the jejunal and colonic mucosa, duodenum, colon, and small intestine” #citedBgee nature.com/articles/s4158… bgee.org/?page=gene&gen…

One of the benefits of enriching GO with OWL axioms, creating a larger Knowledge Graph that links to other OBO Foundry ontologies: The additional prior knowledge enhances accuracy in neural network prediction tasks. Nice work from Fatima Zohra Smaili, Xin Gao, and Lee Chuck.

Our article has been published today in PeerJ Publishing peerj.com/articles/7504 #Biochemistry #Bioinformatics #PlantScience #ComputationalScience

As part of the Society for Personality and Social Psychology climate impact committee, we put together a tool to easily evaluate air travel emissions of a conference or institution and to explore meeting locations that reduce travel: lhackel.shinyapps.io/travel_footpri… (1/n)

#BaselLife2019 if you want to know more about Bgee database and how we are analyzing #scRNASeq data please found me at poster 7.

Does anyone know how one would calculate the relative climate impact of switching to an electric car vs sticking with an old petrol one until the end of its life. Is there an online calculator somewhere?

Group Leader Vacancy: Bioinformatics icgeb.org/group-leader-b…

I am thrilled to share with you the preprint of the final GTEx Consortium main paper: biorxiv.org/content/early/…

The global tree restoration potential science.sciencemag.org/content/365/64…

Ce n'est pas juste un détail concernant ce myxomycète. C'est une méconnaissance fondamentale de la manière dont nous classifions le vivant depuis 30 ans. On sait classer toute espèce d'intérêt dans le vivant, parce qu'on compare les gènes, et non l'anatomie.

Updated preprint on benchmarking of methods for detecting rhythmic genes. We use real data rather than simulations. • some methods have high FP rate in randomised data • all methods detect some ortholog conservation of rhythm, but not a lot. biorxiv.org/content/10.110…

The last 2019 years of global temperature change climate-lab-book.ac.uk/2020/2019-year…

Bgee is now on Linkedin: linkedin.com/company/bgee/

Finally, after all these years, a paper describing all the data, #biocuration and tools in the Bgee database of gene expression! Read, enjoy, and give us feedback (and cite). Frederic Bastian et al 😀 biorxiv.org/content/10.110… #rnaseq #bioinformatics #database

Ouverture d'un poste d'ingénieur.e. biologiste en traitement des données à la Station Biologique de #Roscoff (concours externe du CNRS 🌍). Date limite pour déposer votre dossier : 2 juillet 2020 à 12H sb-roscoff.fr/sites/www.sb-r…