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Thrilled to share two bioRxiv papers from my lab and Lingyan Shi, reporting on the SAME tissue section multi-modality spatial omics! 🤩🥳🙂

Check out our preprint on Perturb-multi (doi.org/10.1101/2024.1…), a multi-year collaborative effort that enabled multi-modal in vivo genotype-phenotype mapping by pooled genetic perturbations and high-dimensionality phenotype readout by imaging and sequencing.

Happy to share HiC2Self, a self-supervised tool for denoising bulk and single-cell Hi-C contact maps! biorxiv.org/content/10.110…

We are still actively looking for talented postdoc(s) to join us to develop single cell sequencing, spatial transcriptomics and machine learning methods to decode how cells talk to each other across space and time in health and disease! #newPI #Stanford #hire #postdoc #lab

This is great resource for people who are interested in AI for biomedicine research~

Congratulations of this impressive work

A great recognition of Bing’s decades of mentorship and leadership in science. So well deserved. Congratulations to Bing and NY Genome Center!

Check out our new method of spatial transcriptomics with computational reconstruction on Nature Biotechnology. Make spatial transcriptomics easier and more accessible. idp.nature.com/authorize?resp…

Delighted to have our Perturb-multiome paper, led by Jorge Diego Martin-Rufino and #AlexisCaulier from our lab, published today in Science Magazine. Please check out this powerful approach to decipher gene regulatory networks enriched for genetic variation: science.org/doi/10.1126/sc…

I'm thrilled to share our new #bioRxiv preprint from ⁦Junyue⁩ lab at ⁦Rockefeller University⁩! We present PerturbFate, a high-throughput single-cell CRISPR platform profiling nascent/pre-existing RNA, steady-state RNA & chromatin accessibility. biorxiv.org/content/10.110…

We are looking for a research assistant to join the lab and work on spatial genomics. Please help spread the word—thanks! careersearch.stanford.edu/jobs/life-scie…

Without its international students, Harvard is not Harvard. hrvd.me/IntStudents25t

Interested in learning more about #AI in molecular #biology? Students can apply for a scholarship and short talk at our Keystone Symposia this September: keysym.us/KSAIBio26 #KSAIBio26 Deadline June 3, 2025 Check out our speakers lineup with academic and industry leaders! 🥳🥂

I wrote an Op-Ed about the government's attacks on Harvard. Please share with anybody who thinks these attacks help anybody. prosyn.org/PhWi74r?h=KyJ1…

Very cool paper. It is a smart idea solving the homology V sequence issue by leveraging the hamming distance. Congrats! Moffitt Laboratory

Combinations of spatial transcriptomics + proteomics + perturbation screening in vivo~ Congrats ZhuangLab @ReubenSaunders William Allen Jonathan Weissman's Lab @xingjiepan Jiaqi Lu

Very cool technology with lineage tracing + merfish Jonathan Weissman's Lab Luke Koblan @puzheng

Great work done with the amazing team! More exciting work TBD!

Excited to share an update on our collaboration with Aviv Regev and Collin Stultz, led by Charles Comiter: predicting single-cell spatial transcriptomics from H&E images using SCHAF. New models, new datasets, and new discoveries. biorxiv.org/content/10.110…

Congrats!