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!! Democratizing #Data access & #Analytics !! #AI tools developed PioneerCampus @HelmholtzMunich Computational Health Center Helmholtz AI accelerate annotation and discovery Chan Zuckerberg Initiative #cryoET data portal pioneercampus.de/themenmenue-re… biorxiv.org/content/10.110… cryoetdataportal.czscience.com/?utm_source=cz…

Recorded talks from the 2024 CCP-EM Spring Symposium are available here... ccpem.ac.uk/downloads/symp…

These are 3D images of the inner workings of human cells. Because they are so detailed, each set can take months to analyze. To accelerate discovery, #CZImagingInstitute scientists applied @lorenzlamm + Ben Engel’ AI technique that could analyze 13k+ images in just 3.5 days

It can take months to annotate a set of tomograms captured by #CryoET manually. Utz Ermel adapted @lorenzlamm + Ben Engel’ deep-learning algorithm MemBrain to annotate cell membranes in over 13k tomograms in just 3.5 days bit.ly/3xqD2Mh

The future is bright! We're going to make amazing discoveries about how cells work, and that means better understanding of health, disease, and even how we age! Thanks to Utz Ermel , Lorenz Lamm , Ben Engel for their amazing work. Paper: czbiohub.org/life-science/m…

⚡️ Excited to announce that CoLIE has been accepted to #ECCV2024! CoLIE uses a neural implicit representation to enhance low-light images according to the Retinex theory. Tingying Peng Julia Schnabel European Conference on Computer Vision #ECCV2026 Paper: arxiv.org/abs/2407.12511 Code: github.com/ctom2/colie

I just made a website for pytom-match-pick using the slick mkdocs-material theme: sbc-utrecht.github.io/pytom-match-pi… Some more updates following soon😮

Super excited to share our latest work on the native in-cell organization of the mitochondrial respiratory chain 🥳 Using cryo-electron tomography🔬, we show how the respiratory complexes (and other complexes) are organized inside native mitochondria!  biorxiv.org/content/10.110…

Really happy to share that the last chapter of my submitted phd thesis is already on biorxiv!🥳 Using a tophat transform, I made template matching more precise, allowing automated annotation with little false positives! #teamtomo biorxiv.org/content/10.110…

1/ 🧵Introducing UNICORN,🦄 the first #AI model for integrating multi-stain #histopathology images for classification, designed to tackle missing data during both training and inference. Great colab between Helmholtz Munich | @HelmholtzMunich & TU München German Heart Centre! the architecture ⬇️

Tingying Peng (Tingying Peng) of Helmholtz Munich | @HelmholtzMunich presented MemBrain v2, “an end-to-end tool for analysis of membranes in cryo-electron tomography” #FEMPL3

I’m thrilled to introduce MemBrain V2(github.com/teamtomo/membr…), our latest research tool developed by Lorenz Lamm and co-supervised by Ben Engel, right here at the beautiful Princeton campus. It’s exciting to see how widely it’s being adopted by the community!

SpotMAX, our software tool for analysing multi-dimensional microscopy data, is finally out! 🎉 And conveniently, I just presented it at the #I2K conference 😀 A multi-year-long effort of many great collaborators and users. But what can SpotMAX do? A small thread

🥳New cryo tomography Preprint ☀️🌱🔬Molecular architecture of thylakoid membranes within intact spinach chloroplasts. doi.org/10.1101/2024.1… Proud to be part of this great work with Ben Engel woj_wie Lorenz Lamm Lorna Malone @whjwood Plants, Photosynthesis and Soil

Excited to share TITAN, a multimodal foundation model for pathology trained on >330k WSIs, synthetic captions, and reports🔬⚡ co-lead w Tong Ding Andrew H. Song Richard J. Chen Thanks to Faisal Mahmood Tingying Peng! Preprint: arxiv.org/abs/2411.19666 Model: huggingface.co/MahmoodLab/TIT…

Hey #teamtomo checkout our team science approach to #cellbio #cryoET I can’t thank Ben Engel enough for this one 😍😍 Awesome team science from Max Planck Institute of Biochemistry (MPIB) Biozentrum, University of Basel Microscopy & Spectroscopy and more Signing off Twitter with a good one biorxiv.org/content/10.110…

A new pre-print for LSFM lovers in the bioimaging community: researchsquare.com/article/rs-585… w. python + napari. We would love to hear your feedbacks. Thanks for the Peng Lab in Helmholtz Munich and the Huisken Lab in Göttingen for having us along the journey in this great collaboration.

Excited to share nnInteractive: The nnU-Net moment for 3D Interactive Segmentation! Supports points, scribbles, boxes, & a new lasso prompt for full 3D masks from 2D inputs. Check it out: arxiv.org/abs/2503.08373 github.com/MIC-DKFZ/napar… mitk.org/wiki/MITK-nnIn…

You want to start tomography? Solve structures inside cells? Reach Nyquist😳? We have a website for you! tomoguide.github.io You'll find a tutorial on how to reconstruct tomograms, pick particles and do subtomo averaging, using different software! Hope it will be useful !