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Fantastic tool from Lotte Polaris ⁦SaeysLab⁩ to automatically annotate cells and analyse spatial transcriptomics, like for example ⁦Resolve Biosciences⁩ data, in an automated way! Works so well on the liver data 🤩🤩🤩! This is the future of spatial analysis!!! 👏🏻👏🏻👏🏻

We are organizing a 🧑‍💻hackathon👩‍💻 in Ghent this June, before the VIB Spatial Omics conference about 🚀 spatial omics tools and methods 🚀 See hackmd.io/@berombau/BJet… for more details on the workgroups. Early registration is recommended as seats are limited!

🚨New paper published!🚨 We investigate 10 different quality metrics for attribution-based explanations on 8 image datasets, and use the results to propose a set of benchmarking guidelines. Read all about it here: doi.org/10.1007/s10994…

Lotte Pollaris presenting the Sparrow pipeline. Fantastic collaboration between SaeysLab, Charlotte Scott and our lab. Automated analysis of spatial omics data. How to annotate cells & correct for imaging artefacts. Fantastic presentation by this super talented PhD student 🤩🤩🤩👏🏻👏🏻

What does the future of spatial omics data processing pipelines look like ? Meet Sparrow, our new human-in-the-loop interactive pipeline that facilitates better quality control, improves segmentation and leads to better downstream analysis Lotte Pollaris biorxiv.org/content/10.110…