Advancing Tissue Mapping with #Spapros🚀 A team led by Prof. Fabian Theis #HelmholtzMunich has developed Spapros, a computational pipeline transforming spatial #transcriptomics. 👉t1p.de/1stzq 💡By optimizing gene selection and probe design, Spapros enhances our

#HelmholtzMunich Shares Guide to Single-Cell Atlases A team led by Dr. Malte Lücken, Helmholtz Munich, has published a guide in Nature Methods to standardize the creation of single-cell atlases – these are crucial tools for mapping cellular diversity. 👉t1p.de/kt8ou

Looking to build a high-quality single-cell reference atlas? Check out this fantastic review by Karin Hrovatin & Lisa Sikkema, guided by Malte Luecken! Packed with nuanced yet practical advice - from preprocessing to integration and downstream applications! 🚀

A Review from Malte Luecken, Lisa Sikkema, Karin Hrovatin, Fabian Theis & colleagues provides a comprehensive and detailed discussion about how to build and use single-cell atlases. nature.com/articles/s4159…

🎉 New Year, New Opportunities! 🚀 We're excited to announce that we are recruiting a PI in Computational Biomedicine Computational Health Center Helmholtz Munich | @HelmholtzMunich . Join us in shaping the future of health. Apply here: bit.ly/4gwXFrh

Looking for a PhD position? Interested in precision medicine in COPD and Asthma using single-cell genomics and machine learning? Looking for a good excuse to travel across Europe (and to Australia)? We are looking for PhD candidates! respire-excel.eu/vacancies

When applying machine learning to human health data, it is not enough to just improve a metric by another percent. We have to go deeper. In our perspective in Nature Cell Biology, we discuss caveats and biases of human single-cell data analysis: nature.com/articles/s4155… 🧵 1/10

Want to see more examples and details? Check out the full publication: nature.com/articles/s4155… Thanks to all co-authors, especially Theresa Willem, who did most of the work, Malte Luecken, who initialised the collaboration, and Fabian Theis. 9/10

❗️11 days left to apply: Early Career Investigator in AI for Nucleic Acid Based Medicines at Helmholtz Munich & Roche.

Looking forward to giving my talk on community-driven benchmarking via Open Problems tomorrow at the first Ascona benchmarking meeting. Mark R@markrobinsonca@{genomic.social,bsky.social} really knows how to put on a conference in this beautiful location! Half of my lab came along :).

🚨 We’re hiring Wellcome Sanger Institute! Join us as a Postdoc or ML Scientist to build generative & foundation models for biology. 🧬 Spatial + single-cell omics 🧠 Diffusion, transformers, multimodal data 💊 Drug discovery via Open Targets Apply: Postdocs in computational biology

Open Problems: Cracking Cell Complexity with Collective Intelligence 💡 More than 1,700 tools exist for single-cell analysis – but how do researchers know which method works best? #OpenProblems is a collaborative open-source platform designed to benchmark, improve and run

Defining and benchmarking open problems in single-cell analysis bit.ly/4l8dsiF

A bit late, but excited to announce our new paper, "Defining and benchmarking open problems in single-cell analysis," a joint effort led by our team (Scott Gigante, Daniel Burkhardt ) at Yale University and the Fabian Theis and Malte Luecken at Helmholtz! 🚀 **Open Problems**, is a living,

Join our "Advances in Single-Cell Technologies" meeting in December in Freiburg, co-organised with Marco Prinz and Katrin Kierdorf. Excellent line-up of speakers covering spatial technologies, lineage tracing, computational methods, and more. uniklinik-freiburg.de/single-cell-te…