
Mohsen Naghipourfar
@mnaghipourfar
Interested in Deep Learning and Computational Biology
ID: 1278489267136802817
02-07-2020 00:42:59
34 Tweet
73 Followers
236 Following



More exciting news on this: our work has made the cover of Nature Biotechnology. AI helps democratize to analyze single-cell data! It basically works like a google map navigator to navigate you through the map of cells to analyze your data!


We’re thrilled to finally share the integrated Human Lung Cell Atlas (HLCA), a single-cell reference atlas of 444 individuals, and 2.2M cells! biorxiv.org/content/10.110… Human Cell Atlas Here’s a tweetorial on how we built it, and, most importantly, how you can use it: (1/20)









Super excited to share the results of our highly collaborative project co-led by Mohsen Naghipourfar, Ali Saberi, Delaram Pouyabahar, Amirhossein Zarezadeh and supervised by my incredible mentor Hani Goodarzi.

1/9 CPAis finally published. It can predict single-cell responses to combinatorial perturbation (drugs, CRISPR). This is a joint collab between @meta and Fabian Theis Helmholtz Munich | @HelmholtzMunich. Read the thread to understand the LEGO analogy! embopress.org/doi/full/10.15…

So excited to see our compositional perturbation autoencoder (CPA) paper out Mol Syst Biol! This generative DL model leverages single cell perturbation (drug, CRISPR etc) studies to predict cellular response. Great collab w AI at Meta! github.com/theislab/cpa embopress.org/doi/full/10.15…


Our paper is out!!! cell.com/cell-genomics/… Congrats to all the authors and thank you Hani Goodarzi for the opportunity! Here is a short summary:

Check out our latest research by Mohsen Naghipourfar and others in our team on building language models of coding sequence. In this preprint, we introduce cdsFM, a suite of codon-resolution language models!👇 biorxiv.org/content/10.110…



