🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Even if #remote work has become standard since Covid, #Research needs close-knit teams and in-person collaborations: "remote teams are less likely to integrate the knowledge of their members to produce new, disruptive ideas" - in today's nature

I wrote an opinion piece about therapeutic and germline editing for Nature Medicine (rdcu.be/du8Tw; nature.com/articles/s4159…) where I lay out the arguments for a cautious, societally licensed approach to consider germline editing in certain restricted circumstances

Preregistration is open for 2nd International Genome Graph Symposium in Monte Verita, Ascona (6/30-7/4). Keynote speakers include Jasmijn Baaijens Kateryna Ewan Birney, Camille Marchet @[email protected] Zamin Iqbal Arang Rhie Eimear Kenny Marinka Zitnik @BenLangmead. iggsy.org

🎗 February 4th marks #WorldCancerDay, dedicated to raising awareness of the devastating illness and encouraging its prevention, detection, and treatment. To be a part of the battle against cancer, it's essential to understand it. Check out our post on the hallmarks of cancer.

Advocating for #federated #cancer #data management, our latest publication showcases the ELIXIR Europe roadmap for cancer data infrastructure in Europe for research and precision medicine, uniting data sharing, privacy, and innovation nature.com/articles/s4301…

Exciting results from our lab by Chalopin Domitille presenting a novel atlas of hepatic innate immune cell atlas in #HCC and identifying THBS1+ Mreg cells as key in disease progression and poor prognosis. #Cancer #bioinformatics #SingleCell #research cell.com/cell-reports/f…

[FR] Félicitations à nos jeunes membres d'équipe pour leur participation remarquable à la Battle Département Sciences Biologiques et Médicales sur le thème "IA : la recherche sans chercheur, la médecine sans clinicien". Bravo ! #IA #bioinformatique #éthique #recherche #clinique sbm.u-bordeaux.fr/actualites/des…

Excited to announce that our DIMet tool Helge Hecht @yguitton44 @Thomas_Daubon to analyse targeted isotope-labeled metabolomics data is now live on Workflow4Metabolomics Galaxy! Explore it under the "Isotopic Studies": workflow4metabolomics.usegalaxy.fr #Metabolomics #Bioinformatics #DIMet

Join us for our 3rd "Biologie Spatiale" webinar on April 22nd at 11:30am, hosted by the Cancéropôle GSO . Johanna Galvis-Rodriguez of IBGC Bordeaux will present her bioinformatics experience in analyzing MALDI imaging data. Network and discuss! #Bioinformatics #Spata2

🔥Just published! What are the principles of plasticity in cancer cells? Studying 7 cancer types we propose that developmental constraints restrict transitions to progenitor & differentiated-like states of adjacent lineages. authors.elsevier.com/a/1jDHoL7PXqQdg Cell Ayushi Patel

Excited to share that a new #EOSC4Cancer deliverable focusing on enhancing interoperability between clinical trial databases and Clinical Decision Support Systems for #oncology. Special kudos to Majd Abdallah for his work on the #NLP powered matching of patients to #clinicaltrials

I've heard from many that it's not about starting databases and repositories, but about long term funding and maintenance. How do we solve these problems?

New publication from our team: DECOMICS – a Shiny app for unsupervised cell type #deconvolution & interpretation of bulk #omic data. Unlock insights from expression or methylation data with state-of-the-art deconvolution and enrichment analysis! #Bioinformatics Slim Karkar

A #foundationmodel leverages large-scale medical knowledge to repurpose drugs for diseases that currently lack approved treatments, and provides explanations to support clinicians’ decisions. News & Views from Francesca Grisoni Alaa Bessadok TU Eindhoven nature.com/articles/s4159…

Excited to present our work on TrialMatchAI, a powerful #AI based tool for matching #cancer patients to #clinical #trials, developed by Majd Abdallah from our #CNRS team, at the AI Meets Cancer Research Symposium 2024! 🧬

🎉 A fantastic way to wrap up the year! 🚀 Excited to share our team's latest work led by Chalopin Domitille : SeuratIntegrate R package enhances Seurat v5 with 8 integration methods & batch correction evaluation tools. Check it out! #scRNAseq #Bioinformatics #SingleCell

It’s crazy how talking with a science buddy is simultaneously what’s most likely to move the project forward and the thing that’s least prioritized in our schedule.

New preprint from our lab! TrialMatchAI an AI-driven patient-to-trial matching system, with outstanding work by Majd Abdallah. It uses fine-tuned LLMs + medical chain-of-thought reasoning. #LLM #ClinicalTrials #PrecisionMedicine #TrialMatchAI #Bioinformatics arxiv.org/abs/2505.08508…

Thrilled to see this fantastic summary of our new preprint on TrialMatchAI! 💥 Huge credit to Majd Abdallah, our team and EOSC4Cancer for making scalable, explainable, and open-source clinical AI a reality. arXiv: arxiv.org/abs/2505.08508… #AI #LLM #ClinicalTrials #PrecisionOncology

🧬 New R package from our team! SeuratIntegrate for application&comparison of multiple single-cell integration methods (Seurat, Harmony, LIGER, scVI…)—in Seurat. Led by Domitille Chalopin, developed by Florian Specque 🔗 bordeaux-bioinformatics.fr/seuratintegrat… #scRNAseq #Bioinformatics #RStats