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Thinking that programming skills is enough to design a computational pipeline is equivalent to thinking knowing how to pipette is enough to design a complex molecular protocol. There are many pitfalls in computation and therefore many controls are needed.

Earlier this week we carried out a preliminary analysis of our first 10x Genomics Xenium prime (5,000 gene) run. We had designed this experiment to get a sense of how the prime chemistry performed compared to the Xenium V1 chemistry.

Call for PhD in quantitative Biology!! Applications open ... unil.ch/quantitative-b… #PhD #computationbiology #quantititivebiology

Come join us for a 1w SIB spatial omics workshop in beautiful Lausanne 🇨🇭 > t.ly/ilpUr < featuring Lars Borm Ahmed Mahfouz Mark R@markrobinsonca@{genomic.social,bsky.social} Yvan Saeys Rasool Saghaleyni @AnnaCSchaar Marco Varrone & more - deadline: Nov 1st.

New Batch Effect blog post! 🧬 Finding domains from spatial omics data has exploded in popularity, with over 87 methods! However, two mistakes in their evaluation might be leading us in the wrong direction. batcheffect.com/p/the-pitfalls…