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I appreciate journals making Covid19 work open access, and I hope when this is over we don’t forget that their logic in doing so tacitly admits that their traditional model slows down the advancement of science

Coronavirus exposes the problems and pitfalls of modelling theguardian.com/science/2020/m…

scVelo 0.2 is out ! Amongst others with - new vignettes to facilitate interpretation of RNA velocities - likelihood-ratio test for differential kinetics - largely extended plotting functionality with great contributions from S. Peidli, V. Marot & the GitHub community.

My perspective piece, with Abhishek Sarkar, on single cell terminology and models is out. Among other things we argue that terminology such as dropout, missing data, and zero-inflation has created (avoidable) confusion in single cell analyses... nature.com/articles/s4158…

Very happy to have this story out. I had a lot of fun working on this for my bachelor thesis, the publication has been a long time coming! Thanks to all who helped! RostLab link.springer.com/article/10.100…

Tag 9⃣ im #mdcBerlin-#Adventskalender: Die #PhD-Studentinnen Brigitte & Valérie nehmen uns heute mit in die AG Haghverdi 👇 Day 9⃣ of the #mdcChristmas21 calendar: today, #PhDstudent Brigitte & Valérie (Haghverdi Lab) show us their territory 👇 #Weihnachten #Christmas MDC-BIMSB

So excited to announce the first preprint from the Haghverdi lab is out!👑 Check out the wonderful work of Valérie Marot-L. , Brigitte Bouman and Fearghal Donaghy “Towards reliable quantification of cell state velocities” doi.org/10.1101/2022.0…

This new Methods paper provides a close look into some current pitfalls of estimating #RNA-velocity --> new solutions and improvements #kappa-velo #eco-velo Valérie Marot-L. Brigitte Bouman Laleh Haghverdi Read it here: plos.io/3e2oXen

Hmmm. I just had a bizarre experience, involving a global news organisation and a trillion dollar corporation. (I got caught in the middle, so... owch.) It’s not the sort of experience the people involved usually talk about in public… so I think I’ll talk about it in public. 🧵

Our preprint is out! We introduce CCLONE, a method using noisy & sparse SNVs called directly from scRNAseq data to identify cancer populations & somatic events. Congrats to Valérie Marot-L. Sergi Beneyto Calabuig Benedikt Obermayer @larsplus Dieter Beule Laleh Haghverdi! biorxiv.org/content/10.110…

At the beginning of the week, Valérie Marot-L. and Colin Cess presented their new & awesome work at the #ISCO2024 in Barcelona! We were happy to see so many interested people. Thanks to the organizers!

Happy to announce that CCLONE is out on bioinformatics 🥳 Our method identifies cancer cells based on noisy & sparse SNVs called directly from scRNA-seq data. Congrats to Valérie Marot-L. Sergi Beneyto Calabuig Benedikt Obermayer @larsplus Dieter Beule Laleh Haghverdi! doi.org/10.1093/bioinf…