Deepto Mozumdar (@mozumdardeepto) 's Twitter Profile
Deepto Mozumdar

@mozumdardeepto

Postdoc @UCSF w/ @joeBondyDenomy & @AgardLab. PhD @Yale/@UCBerkeley @schepartzlab. Dabble in macromolecular machines, biochemistry, chembio & molecular biology

ID: 1434392979381178368

calendar_today05-09-2021 05:49:12

232 Tweet

211 Followers

581 Following

Joe Bondy-Denomy (@joebondydenomy) 's Twitter Profile Photo

Did you know that bacteria remember their past for many generations? In this new preprint from us (Alexis Villani and Senen Mendoza) and Banin lab (Esther Shmidov ), we reveal the "how?" and "why?" underlying a long-standing mystery in bacterial memory. biorxiv.org/content/10.110…

smriti sangwan (@smriti_sangwan) 's Twitter Profile Photo

First month as #newPI is in the books. Check out my lab website to learn more about the lab and opportunities. We have openings at all levels. If you are interested in cryoEM/cryoET to work on stress signaling pathways, please reach out. sites.northwestern.edu/sangwan/

Phage Directory (@phagedirectory) 's Twitter Profile Photo

.NIAID News has announced a $6M funding opportunity to establish Centers for Accelerating #PhageTherapy to combat ESKAPE pathogens. By this time next year, 2-3 phage therapy centers in the US will be funded. Deadline: Jan 28, 2025 Reach out to: Kyung Moon buff.ly/3C37jme

Patrick Hsu (@pdhsu) 's Twitter Profile Photo

🧵Epigenetics require the coordinated interplay of diverse proteins and mechanisms. To systematically explore this, we invented the COMBINE platform to quantify the effect of >50,000 pairs🧦of long epigenetic effectors on endogenous human transcription biorxiv.org/content/10.110…

🧵Epigenetics require the coordinated interplay of diverse proteins and mechanisms. To systematically explore this, we invented the COMBINE platform to quantify the effect of >50,000 pairs🧦of long epigenetic effectors on endogenous human transcription biorxiv.org/content/10.110…
EMBL Events (@emblevents) 's Twitter Profile Photo

🙋🏻🔬 Will you be joining us for #EMBOinsitu? What are the recent methodological developments and new tools for cell biology across scales: from molecules to organelles, cells and cell-cell interactions❓ How does one meaningfully integrate data from different methods❓ What

🙋🏻🔬 Will you be joining us for #EMBOinsitu?

What are the recent methodological developments and new tools for cell biology across scales: from molecules to organelles, cells and cell-cell interactions❓
How does one meaningfully integrate data from different methods❓
What
Alice Ting (@aliceyting) 's Twitter Profile Photo

APEX peroxidase is a versatile tool for proximity labeling and electron microscopy (EM) but its requirement for toxic H2O2 is a liability. We now report LaccID, a multicopper oxidase evolved from an ancestral fungal laccase that oxidizes aromatic substrates using non-toxic O2

APEX peroxidase is a versatile tool for proximity labeling and electron microscopy (EM) but its requirement for toxic H2O2 is a liability. We now report LaccID, a multicopper oxidase evolved from an ancestral fungal laccase that oxidizes aromatic substrates using non-toxic O2
Iana Fedorova (@femtokot) 's Twitter Profile Photo

I am very proud to share our paper on Tad1/Tad2 sponges, which appeared to be multifunctional anti-defense proteins that inhibit many different signaling-based immunity systems!💫 nature.com/articles/s4158…

I am very proud to share our paper on Tad1/Tad2 sponges, which appeared to be multifunctional anti-defense proteins that inhibit many different signaling-based immunity systems!💫
nature.com/articles/s4158…
Liz Kellogg ❄️🔬 (@kellogg_liz) 's Twitter Profile Photo

Hello Biophysical Society Cryo-EM Subgroup Members, As we approach the 2025 Biophysical Society Annual Meeting in Los Angeles, we need nominations for 5 Cryo-EM Subgroup leadership positions. This is a great chance to become more involved with the Society and to support the Cryo-EM

Joe Bondy-Denomy (@joebondydenomy) 's Twitter Profile Photo

Cyclic nucleotide signals are a common anti-phage mechanism. How can (jumbo) phage keep up? Sponges! See thread from Iana Fedorova, a very talented post-doc in lab. We (w/ Feng lab) report amazing diversity in ligands bound by phage proteins Tad1/Tad2. 1/n rdcu.be/dYAVS

Joseph E. Peters (@joepeterslab) 's Twitter Profile Photo

Eukaryotes have linear DNA and their telomeres are hotspots for transposons. Many bacteria are also known to have linear genomes. We identified several families of independently evolved telomeric transposons. 1/7 biorxiv.org/content/10.110…

Peter Dougherty (@peteredougherty) 's Twitter Profile Photo

Are there virulent phages hiding in your bacterial culture? Here we find hundreds of virulent phage genomes in bacterial genome assemblies. Bioinformatic and experimental evidence indicate these are not contaminations, but represent persistent infections. biorxiv.org/content/10.110…

Shai Zilberzwige-Tal (@zilberzwige) 's Twitter Profile Photo

RNA-guided systems span kingdoms, from bacterial immunity to eukaryotic gene regulation. How did they evolve? We traced the origins of CRISPR-Cas13 and identified its likely ancestor: an RNA-based toxin-antitoxin (TA) system. Here’s what we uncovered: cell.com/cell/fulltext/… 1/8

Kevin Forsberg (@kvnforsberg) 's Twitter Profile Photo

My lab’s first preprint! We used functional metagenomics to identify phage defenses in human and soil microbiomes. We scaled these selections while maintaining accuracy, enabling us to examine 9 habitats for defense elements against 7 phages. biorxiv.org/content/10.110… 1/10

My lab’s first preprint!

We used functional metagenomics to identify phage defenses in human and soil microbiomes. We scaled these selections while maintaining accuracy, enabling us to examine 9 habitats for defense elements against 7 phages.

biorxiv.org/content/10.110…

1/10
alex meeske (@alexjmeeske) 's Twitter Profile Photo

Check out our new paper describing rAcrVIA1: an RNA anti-CRISPR that mimics guide RNAs to inhibit Cas13. Very fun project with stellar UW undergrad Victoria Hayes and collaboration with Ning Jia's group! science.org/doi/10.1126/sc…

Florent Waltz (@florentwaltz) 's Twitter Profile Photo

You want to start tomography? Solve structures inside cells? Reach Nyquist😳? We have a website for you! tomoguide.github.io You'll find a tutorial on how to reconstruct tomograms, pick particles and do subtomo averaging, using different software! Hope it will be useful !

You want to start tomography? Solve structures inside cells? Reach Nyquist😳?
We have a website for you! tomoguide.github.io 
You'll find a tutorial on how to reconstruct tomograms, pick particles and do subtomo averaging, using different software! 
Hope it will be useful !