🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Become part of the #GHGAsquad at Universität Tübingen! We are looking for a scientific project manager at our data hub in Tübingen, supporting our central project management team and training efforts! More at ghga.de/about-us/jobs

This is my #GitHubUnwrapped! Get your own: githubunwrapped.com Nextflow is my top language this year 🤩. If you are not using it yet: nextflow.io Join nf-core for an awesome community to help you get started! 🍏#Bioinformatics #pipelines

Apply by January 15 to join the Tübingen AI faculty as a tenure-track or full professor! Want to learn more? Check out tuebingen.ai/careers or connect with me at #NeurIPS2023 ☕

Wer nach dem Master in #Bioinformatik oder #Systembiologie auf der Suche nach einer freien Stelle ist, die die Möglichkeit zu einer Promotion eröffnen kann, ist herzlich eingeladen, sich hier zu bewerben ⬇️

Super excited to organize a local site for this nf-core hackathon with kubranarci in Heidelberg. Hoping to see many of you code some Nextflow with us there 🤩✨🧑‍💻!

This has been the best collaboration ever. Sarek has always been a community pipeline, it hasn't been my own project for a while, and @RikeHanssen took charge for so much. Looking forward for whatever the future plans for nf-core Nextflow and of course Sarek

Takes me back to an email thread from.. 2019 (!) with Ewan Birney, talking about how NGI Sweden at SciLifeLab was switching from BAM to CRAM.. 😅 Well here is the impact of that change in print. Pretty dramatic!

Exciting news! 🎉 A new paper detailing the evolution of nf-core/sarek is out! 📄Congrats, @RikeHanssen and colleagues! From rewriting it to DSL2 to slashing AWS costs by 70% to $20, remarkable strides have been made! Read more at nf-co.re/blog/2024/sare…

Empowering bioinformatics communities with Nextflow and nf-core biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Empowering bioinformatics communities with Nextflow and nf-core biorxiv.org/content/10.110…

In the introduction, we look into usage and citations of workflow managers. It's clear that their popularity is surging, notably those that are command-line tools. Citations of Nextflow have especially jumped in recent years.. 📈

It's been 7 years since the first Nextflow paper and 4 since nf-core. Much has happened in that time - we present the first official description of Nextflow DSL2. We describe modules, nf-core outreach and community growth, not to mention improvements in tooling 🛠️

The second half of the paper describes the experience of the EuroFAANG consortia as they adopted nf-core. We cover initial motivations and hurdles, with a figure showing how maintenance of community-owned pipelines can shift over time, a true superpower of nf-core ✨

This section goes on to chart the experiences of the EuroFAANG consortia and the benefits of gradual adoption of Nextflow and nf-core. The final result is nuanced and truthful and we hope it can provide a blueprint for other consortia.

In the conclusion we touch on the future of this collaboration. The recently announced nf-core "Special interest groups" will provide a new venue for ongoing collaboration. We can't wait to see where this takes us! See below for more on the new groups: nf-co.re/blog/2024/spec…

🎙️ We released a Nextflow #channels podcast about the manuscript today, where a handful of the authors discussed the origins of the collaboration and their personal highlights in the text. You can catch up on YouTube, Spotify, LinkedIn or on Twitter: x.com/nextflowio/sta…

Writing this paper has been a huge undertaking, involving many people. Huge thanks to everyone who took part, as well as the wider communities whose work we describe. Please share the preprint as widely as possible - we intend to submit to a journal soon!

Huge congratulations to the nf-core community - in particular the authors of the new preprint biorxiv.org/content/10.110… Extraordinary outputs possible when the flexibility of Nextflow is honed by an open community of intelligent, careful, and caring scientists. Everybody wins.

The journey has been an incredible adventure. Harmonizing genomic data analysis methods across all farmed animal species is a dream come true for any evolutionary biologist, and it’s all #opensource 😉 thanks to the #euroFAANG and nf-core communities