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Got observational data with time-varying treatments and confounders? Want to estimate the effects of sustained treatment strategies? Then you'll enjoy this gentle introduction to the gfoRmula package in #rstats. Led by Sean McGrath & Victoria Lin cell.com/patterns/pdf/S…

If you like using propensity matching, think again. See pubmed.ncbi.nlm.nih.gov/18058851/ or proceedings.mlr.press/v9/guo10a/guo1… by Philip Dawid or gking.harvard.edu/publications/w… by Gary King

powmic: #Rstats pkg for power assessment in #microbiome case-control studies academic.oup.com/bioinformatics… github.com/lichen-lab/pow…

HUMAnN 3.0 (alpha) is out! Functionally profile #metagenomes or #metatranscriptomes at species-level resolution. Designed in tandem with MetaPhlAn 3.0, more options for fine-tuning tiered search, 2x the species #pangenomes and 3x the gene families. Enjoy! huttenhower.sph.harvard.edu/humann3/

Woohoo -- I finally carved out some time today to make a Wiki to answer the most common questions I get about my #R #rstats package `breakaway` 🥳😻🎀 Check it out here: github.com/adw96/breakawa… #rstats #microbiome #microbialdiversity

In addition, you can now also set discrete colour/fill scale defaults via a vector (or list) of colour codes. Super useful for providing colour-blind safe defaults! #rstats

New R package rmsb: Bayesian counterpart to the rms (regression modeling strategies) package now on CRAN. Uses pre-compiled Stan code. Information including lots of examples at hbiostat.org/R/rmsb #rmscourse @vandy_biostat Vanderbilt University Data Science Institute

Metalign: efficient alignment-based metagenomic profiling via containment min hash genomebiology.biomedcentral.com/articles/10.11… github.com/nlapier2/Metal…

#Statistics thought of the day: if you are not certain how to transform a continuous dependent variable to make assumptions work (e.g. normality of residuals) use a semiparametric method that is transformation-invariant, e.g. proportional odds/hazard model. #rmscourse #bbrcourse

Submit your responses now for the National Microbiome Data Collaborative survey for users: bit.ly/nmdc_survey.

The latest mSystems brings to the public a new interactive web tool for visualizing large-scale phylogenetic trees - Read all about it: jacobsschool.ucsd.edu/news/release?i… IBM Research #mSystemsJ ASM #Phylogenetic QIIME 2 #Python

bioBakery 3 is out in eLife - the journal! It describes our latest versions of MetaPhlAn 3, HUMAnN 3, StrainPhlAn 3, PanPhlAn 3 and more from Segata Lab and hutlab ! Huge thanks to so many but especially to Francesco Beghini Francesco Beghini and Lauren McIver! elifesciences.org/articles/65088

What started as a 1 day side project turned into a nearly 3 year long lab analysis. "Microbiome differential abundance methods produce disturbingly different results across 38 datasets" biorxiv.org/content/10.110…

Lots of #COVID19 cases in Greater #Cincinnati today - highest daily total since winter. Highest case rate (per 100,000 on a 7-day moving average) is now among youth 0-19yo. #GetVaccinatedNow & #MaskUp for yourself, your neighbors, and our children. #DeltaVariant #schoolreopening

In mice, pups with a #microbiome fortified w/ #butyrate had reduced risk of #biliaryatresia Study Nature Communications nature.com/articles/s4146… Congrats Jorge Bezerra Lindsey Romick Nicholas Ollberding and team! View our blog: scienceblog.cincinnatichildrens.org/boosting-the-m…

A collaborative research team—including two of our own, Drs. Pat Ryan & cole—sought to determine the extent to which neighborhood-level socioeconomic indicators explain racial & ethnic disparities in childhood wheezing & #asthma.

Calling all biostatisticians, statisticians or others w/ #PhD's in related fields: we're #hiring! We're seeking an Associate #Professor to join our #diverse, talented & multidisciplinary team! Apply through the Cincinnati Children's #career page (Req# 123600): jobs.cincinnatichildrens.org/search/jobdeta…

WHERE WILL HER GO? youtube.com/shorts/R_e3tsR… via @YouTubesqwssvz wet few 12222222222