
Franklin Nobrega
@nobregafl
bsky:fnobrega | Phages, Bacterial defense systems, CRISPR, Microbial communities, Mucus interactions | klebphacol.org | phage-collection.org
ID: 936703163398262785
https://fnobregalab.org 01-12-2017 21:06:52
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1/8 Just launched: DeepMolecules – a webserver for predicting protein-small molecule interactions using AI, now out in Nucleic Acids Research! academic.oup.com/nar/advance-ar… DeepMolecules.org Heinrich-Heine-Universität Düsseldorf



Realfreq, a framework for real-time base modification analysis for nanopore sequencing, is now published in Bioinformatics. Written efficiently using C, a laptop can keep up with a Oxford Nanopore MinION sequencer, and a desktop a PromethION 2 solo flowcell. academic.oup.com/bioinformatics…


Want to find new lytic phages .... then obviously look in bacterial genomes !!! Led by Thomas Sicheritz-Pontén , with Martha Clokie Panos G. Kalatzis , Bent Petersen and many many others... biorxiv.org/content/10.110…

White smoke, we have not only a new pope, but also 16 new anti-phage systems in integrons ! In collaboration with the Didier Mazel lab, we show in our new paper that cassettes of these large platforms encode known anti-phage defenses and uncovered 16 new ones. science.org/doi/10.1126/sc…

How to find fantastic new #RNAs? The J2 antibody is the gold standard to detect, map & enrich dsRNAs. Co-led by Bou-Nader lab, Kevin Juma, Ankur Bothra & Steve Leppla’s lab, we visualize how J2 recognizes dsRNA and define its epitope, specificity & bias. doi.org/10.1101/2025.0….





Come work with me, Martha Clokie ,Spyridon Megremis, PhD (he/him)🇬🇷🏀☘️🎧 in the Becky Mayer Centre for phage research on the isolation and genomes sequencing of 1000s of phages for a biobank. jobs.le.ac.uk/vacancies/vaca…



Intra-phage immunity: Set a (pro)phage to catch a phage: Franklin Nobrega highlights work screening temperate phages for defenses against other temperate phages, uncovering an array of prophage-encoded immune systems in E. coli. cell.com/cell-host-micr…



Latest BREX story from the lab - turns out there is a nuclease after all! Congrats to Jenny Readshaw and the whole team, including wonderful collabs Barry Stoddard, Brett Kaiser and Darren Smith. Nucleic Acids Res New England Biolabs Durham BioSciences academic.oup.com/nar/article/53…

We’re excited to bring the phage-collection.org to #SummerScience at The Royal Society.org next week — showcasing our work on phage therapy and open science. Big thanks to James Gallagher for covering the project in the BBC News (UK). Read more here: bbc.com/news/articles/…

People are being invited to help find phages - tiny viruses that could hold the key to combating #AntibioticResistance. Our BRC’s Franklin Nobrega leads the project, which will be on display at the The Royal Society Summer Science Exhibition. Find out more: southamptonbrc.nihr.ac.uk/post/the-solut…

