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Is the new variant of SARS-CoV-2 more transmissible than others and if yes by how much? We CMMID are currently looking at this by comparing reproduction numbers between local areas in England (w/ Sam Abbott (@[email protected])). WORK IN PROGRESS, NOT PEER REVIEWED. 1/10 raw.githubusercontent.com/epiforecasts/c…

2 RA or Postdoc (London, United Kingdom) Modelling Vaccine Impact in the Vaccine Impact Modelling Consortium with Dr. Katy Gaythorpe at VIMC MRC Centre for Global Infectious Disease Analysis @Imperial_JIDEA Imperial IDE More details: iddjobs.org/jobs/2-x-resea…

Take-home message: development of outbreak analytics tools needs to be supported by our funders and institutions #epitwitter R Epidemics Consortium (RECON) GOARN Wellcome Gates Foundation Epiet Alumni Network RECAP London School of Hygiene & Tropical Medicine CMMID Rich FitzJohn

@cap1024 GOARN My experience has been basics done well will address many issues, but will also pave the way for more advanced analyses. Part of the reasons why R Epidemics Consortium (RECON) has devoted time to both - examples follow.

@cap1024 GOARN R Epidemics Consortium (RECON) Example of basics done well can be found in @_TimTaylor_ 's incidence2 for handling epidemic curves repidemicsconsortium.org/incidence2/

@cap1024 GOARN R Epidemics Consortium (RECON) @_TimTaylor_ How basic tools lead to more advanced things: see #rstats trending and trendeval for automated model selection: github.com/reconhub/trend… itself used for fitting epidemic trends in i2extras: repidemicsconsortium.org/i2extras/artic…

RStudio 1.4: IT'S FINALLY HERE! blog.rstudio.com/2021/01/19/ann… #rstats

How do we adapt #COVID19 transmission models to local settings & why is that important? 🤔 Dr Roz Eggo & colleagues explain in @nresearchnews, outlining the challenges of incorporating setting-specific intricacies. ⬇️ go.nature.com/39R2udY Adam Kucharski Jeanette Dawa Zulma Cucunubá

Many thanks to R Consortium for their support and to Matthieu Rolland and Ben Ortiz Ulloa for getting this off the ground! #rstats skills can help inform #epidemic response - all help is welcome!

5/5 Grateful to reviewers and supporting organisations including TEPHINET, EPIET Alumni Network, and MSF OCA. #rstats #epitwitter #epi #epidemiology #FETP #EPIET TEPHINET AFENETAfrica, @GHDEMPHNET Epiet Alumni Network MSF Science R Epidemics Consortium (RECON) GOARN CDC Global Health ProEpi London School of Hygiene & Tropical Medicine

Amazing work by amazing people! Anyone interested in #outbreak analytics in #rstats, this new, free, comprehensive resource is soon going to be your new best friend. Epiet Alumni Network GOARN @dr_anne_cori Dirk Schumacher 🚲 @stephaneghozzi Rich FitzJohn R Epidemics Consortium (RECON)

1/2 The Epi R Handbook is updated to R v4.1! Written by and for applied epidemiologists - check out epiRhandbook.com! Also, our page on epidemic curves now reflects v1.1 updates to the incidence2 package (developed by R Epidemics Consortium (RECON)) #rstats #epitwitter TEPHINET GOARN

2/2 Learn how to make many kinds of epidemic curves using ggplot2, incidence2, cowplot and other R packages at epiRhandbook.com/epidemic-curves MSF Science AFENETAfrica @GHDEMPHNET #FETP

Are you interested in learning how to use R? Written by and for epidemiologists, the Epidemiologist R Handbook is a free, open-access resource serving as a reference manual for R and is available in an offline version. Check out the latest updates: epirhandbook.com

R Epidemics Consortium (RECON) RECAP GOARN Epiet Alumni Network CMMID London School of Hygiene & Tropical Medicine @m_hoehle The Epidemiologist R Handbook epibot

Some RECON tools featured in the #Covid_19 surveillance app released by World Health Organization (WHO) !

It’s appalling that rich countries, having bought and hoarded their way to the front of the COVID vaccine queue, are now talking about autumn boosters rather than going all out to get doses to the places that really need them. reuters.com/business/healt…

Hey folks! The deadline to apply as a community to host a (fully paid for) open science + open source intern is September 17 - I want to see more communities applying! Pls dm me if you have qs, or email y.yehudi at wellcome dot org 👇👇👇

pins 1.0.0 is out now: blog.rstudio.com/2021/10/04/pin… — pins publishes data, models, and other R objects, making it easier to share them across projects and with your colleagues. pins 1.0.0 includes a major update to the interface. #rstats

Looking forward to csupervising this PhD project in partnership with the University of Nagasaki: lshtm.ac.uk/study/research… epibot The Epidemiologist R Handbook London School of Hygiene & Tropical Medicine CMMID Epiet Alumni Network GOARN R Epidemics Consortium (RECON)