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Really excited to share our paper on TetTCR-SeqHD! This new tech enables 4 dimensions of info on tens of thousands of single T cells, antigen specificity, TCR, gene exp, and phenotype. Thanks to all the authors, especially Keyue (Kevin) Ma for pushing it across the finish line!

I still remember how this paper happened in lab meeting… congratulations Dvir Aran and Zicheng Hu!

As we commemorate #InternationalWomensDay, we want to celebrate the wonderful women that lead and represent in #science and #research every day and make so many of the studies available in ImmPort, possible. We thank you! #OpenScience #DataSharing #ImmPortDB

A big day for life science The Tabula Sapiens, like a Periodic Table of Human Cells, ~500,000 cells analyzed, 24 tissues / organs Science Magazine "a broadly useful reference to deeply understand and explore human biology at cellular resolution" science.org/doi/10.1126/sc…

We just released #gget version 0.2.0! 🎉 Thanks to your feedback, we were able to further improve its ease of use. In addition to Ensembl IDs, gget now also supports WormBase 🪱 and FlyBase 🪰 IDs. All new features are listed here: github.com/pachterlab/gget

Vaccine response #opendata in ImmPort can even be used as a comparison group for new vaccine studies, as shown by Prabhu Arunachalam and team in nature: Systems vaccinology of the BNT162b2 mRNA vaccine in humans (paper go.nature.com/3QCjh97) #FOCIS2022

If you want to explore the benchmark results yourself, check out our interactive shiny app at shiny-portal.embl.de/shinyapps/app/…. All the code of the paper is available at github.com/const-ae/trans….

What a resource! 🤯 850,000 #scRNAseq cells from 226 samples across 10 cancer types!

Unexpectedly won first place at the LatchBio AI+Bio Hackathon in SF. Met these wonderful folks yesterday morning and built an application to extract social determinants of health data directly from a patient-physician conversation using OpenAI Whisper and Chat API. Vishnu Rajan Tejus

Actually, not transforming the data outperforms log(y/s+1). 1/

Legacy study Revealing #COVID19 Vaccine responses, broad/ crossprotection associated with specific B and T cell subsets, beautiful story 👇👇

Go see our partners #FOCIS2023 Build your skills and then tap our golden treasure of #immune data immunespace.org

Delighted to share in Nature Medicine, COVID19 vaccine responses in >2800 immune suppressed people. Enormous thanks to patients and superb investigators OUH NIHR Oxford Biomedical Research Centre Sam Murray Tom Marjot Georgi Meacham Susanna Dunachie and many more nature.com/articles/s4159…

Elegant #HumanImmuneVariation study by Peters Lab & Adam Butterworth et al - mapping genetic determinants of plasma protein levels (Olink Proteomics) nature.com/articles/s4159… Imperial Department of Immunology & Inflammation Imperial College London

Finally available in California! Sign up to join the pilot California’s mobile driver’s license / ID card is a “free, secure, and convenient digital ID”, supposedly works at SFO and LAX. Doesn’t (yet?) work with Apple Wallet like other states… dmv.ca.gov/portal/ca-dmv-…

Thinking about applying for the Computational Models of Influenza Immunity (CMII) Cooperative Agreement Program at NIAID News? See if ImmPort #opendata on influenza and vaccination can help! niaid.nih.gov/grants-contrac…

#ImmPortDB was thrilled to participate in DRKB- a meeting of NIH-affiliated repositories and knowledge bases. Thanks to Steven Kleinstein 🖥 for a great presentation on ImmPort during the Community-Driven Data Curation Panel, to the organizers, and to the NIH Office of Data Science Strategy for having us.

CONGRATS ImmPort (NIAID News Peraton UCSF Bakar Computational Health Sciences Institute) on reaching 1000 #openaccess #opendata sets related to immunology and inflammation and related conditions and treatments like cancer immunotherapy and pre-term birth! I still remember when we had fewer than 50! Some of

🎉Exciting news! #ImmPortDB celebrates its 20th anniversary this year! 1k studies & vast amounts of immunologic & infectious disease data from 160+ areas & 35 types - is pivotal for global biomedical research! Visit: bit.ly/3YDJUB4 to learn more! #ImmPortDB #Research