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I'm so excited to share our 🚨new paper🚨 in Cell Host & Microbe, reporting a comprehensive analyses of Bacteroidales isolates 🦠 in a large human gut microbial culture collection 🧫🧪! cell.com/cell-host-micr… thread w/ main findings below 👇 1/🧵

I am excited to share our work "Systematic discovery of antibacterial and antifungal bacterial toxins" that is published in Nature Microbiology nature.com/articles/s4156…

Glad to share our preprint 🏃**LongTrack**: long read metagenomics-based precise tracking of bacterial strains (and their genomic changes!) after fecal microbiota transplantation. A 4+ years journey and tour de force by ** Yu Fan ** and team. A long 🧵 💩Fecal microbiota

How can single-cell transcriptomics profile phage infection in individual microbial cells? Check out our preprint with Anika Gupta, Norma Morella, Dmitry Sutormin & other authors, in collaboration with Georg Seelig Georg Seelig and Neel Dey (Fred Hutch). biorxiv.org/content/10.110…

1/14 Excited to share our new ElinavLab Microbiome & Cancer Elinav Lab at DKFZ Weizmann Institute paper Cell, championed (for 6 years!) by the amazing Rafael Valdés, Avner Leshem, Danping Zheng and twitter-less Alon Savidor. In this work, we’ve adopted into microbiome.. cell.com/cell/fulltext/…

Today we report a compendium of human gut microbiomes with >168,000 samples We discovered distinct microbiome patterns across the globe, and show we can predict where a person lives just from their gut bacteria Now out in Cell cell.com/cell/fulltext/…

Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence in Bacteroides fragilis biorxiv.org/content/10.110… #biorxiv_micrbio

📢 Excited to share our new paper in #npjPrecisionOncology: We present a roadmap for using #scRNAseq and #MachineLearning to study and predict response to immune checkpoint inhibitors. 👉 nature.com/articles/s4169… #CancerImmunotherapy

💩🦠 Happy to present our paper on the engraftment of the enteric #virome in #UC patients receiving an #FMT-> temporal (~5 weeks) virome shift towards the healthy donor, primarily driven by #microviruses. Severine Vermeire RaesLab pubmed.ncbi.nlm.nih.gov/40371968/

🚨 new paper alert! science.org/doi/10.1126/sc… During my PhD, one of the most frustrating challenges was trying to interpret genes labeled as “hypothetical proteins.” 1/n