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Congratulation to #BoG23 jxtxFoundation scholarship awardees! Make sure to attend their presentations and posters (see numbers below)

Our single-cell and spatial omics simulator scDesign3 is now online: nature.com/articles/s4158… scDesign3 has two functionalities: (1) synthetic data simulation and (2) real data interpretation and modification 1/

Visit poster #256 by jxtxFoundation awardee Dongyuan Song #BoG23

Jingyi Jessica Li is the 2023 recipient of the Overton Prize compmed.ucla.edu/news/jingyi-je… Jingyi Jessica Li (李婧翌) @uclastat ISCB News

The order of actions matters in probability calculation: from the Monty Hall problem to the false discovery rate in high-throughput data analysis. Here is my correspondence piece Nature Biotechnology :nature.com/articles/s4158… 1/

Very excited that our latest version of scMerge2 to integrate multi-sample multi-condition single-cell datasets is out Nature Communications. We managed to integrate ~5 million cells from 20 COVID-19 studies. The new scMerge2 is available at github.com/SydneyBioX/scM….

It was my great honor to give the Overton keynote lecture about using synthetic null to enhance the rigor of data analysis #ISMBECCB2023 Talk slides: jsb.ucla.edu/sites/default/… Preprint of our new method ClusterDE: doi.org/10.1101/2023.0…

I also gave a talk on behalf of my student Dongyuan Song about scDesign3 at RegSys COSI #ISMBECCB2023 Talk slides: jsb.ucla.edu/sites/default/…

I am very delighted to announce that today is my first day to start an exciting position as Assistant Professor in the Department of Biostatistics (UNC Biostatistics) and the Department of Genetics at the University of North Carolina at Chapel Hill! I wish to express my sincere

new blog post: neighborhood/cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor #rstats #spatialtranscriptome divingintogeneticsandgenomics.com/post/neighborh…

Struggling with spatial omics integration? 🔍 From Visium to CosMx, VoltRon has your back -> our R package integrated with openCV-derived features and GUI! Dive in, explore & tell us your dream feature. Kudos to @ArturMa75503143! 🚀 Check it out: github.com/BIMSBbioinfo/V…

I’m happy to announce that my former PhD student and postdoc Dr. Xinzhou (Shawn) Ge Xinzhou Ge will join the Department of Statistics at Oregon State University Oregon State University as an Assistant Professor this fall. Xinzhou led our work on p-value-free FDR control. Congrats to him!

5 days left to apply for the 2023 JXTX + CSHL Genome Informatics Scholarship. Do not procrastinate ... apply now at jxtxfoundation.org/news/2023-04-0…

Congratulations to Dr. Dongyuan Song for completing his PhD and joining UConn Health Dept. of Genetics and Genome Sciences as Assistant Professor! Dongyuan has been a cornerstone of our lab for the past 5 years. Wish him continued success in his independent career!@SongDongyuan

Nice benchmarking study of 10 different foundation models for single cell data analysis..important best practices, limitations and insights to guide future applications Hongyu Zhao biorxiv.org/content/10.110…

For simulation tasks scDesign3 outperformed scFMs in simulating reference based scRNA-seq datasets Dongyuan Song Jingyi Jessica Li (李婧翌)

If you are an undergraduate student at UConn, the Health Research Program is a fantastic opportunity to get research experience! Check the HRP post for my lab: ugradresearch.uconn.edu/hrp/hrpsu25-28/

I’m honored to join Fred Hutch as Professor and Program Head of Biostatistics, and as the Donald and Janet K. Guthrie Endowed Chair in Statistics. Excited to be part of a deeply collaborative and scientifically vibrant community with a rich legacy of impact.