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Microbial communities can harbor many species that do not coexist in pairs, yet can coexist in the full community. Here we provide the mathematical foundations of emergent coexistence, and explain why it can't be predicted from pairwise tests biorxiv.org/content/10.110…

Composition and liquid-to-solid maturation of protein aggregates contribute to bacterial dormancy development and recovery | Nature Communications nature.com/articles/s4146…

Out Now! Secretory IgM regulates gut microbiota homeostasis and metabolism bit.ly/44Rj2AJ #GutHealth #Microbiota #Immunology

Happy to share that our study on gut microbiome associations with colorectal cancer (CRC) is out in Nature Medicine! (doi.org/10.1038/s41591…).

Biases from Oxford Nanopore library preparation kits and their effects on microbiome and genome analysis. #nanopore #genome doi.org/10.1186/s12864…

varVAMP: degenerate primer design for tiled full genome sequencing and qPCR. #PrimerDesign #GenomeSequencing #Amplicons Nature Communications nature.com/articles/s4146…

New online! The gut microbiome connects nutrition and human health bit.ly/459iOVN

Bacteroides fragilis promotes chemoresistance in colorectal cancer, and its elimination by phage VA7 restores chemosensitivity: Cell Host & Microbe cell.com/cell-host-micr…

Mapler: A pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads | Bioinformatics | Oxford Academic academic.oup.com/bioinformatics…

Microbiome mismatches from microbiota transplants lead to persistent off-target metabolic and immunomodulatory effects: Cell cell.com/cell/abstract/…

You(r gut microbes) are what you eat... Suzanne Devkota and colleagues describe the powerful role of diet in shaping the gut microbiome, particularly in the first year of life, and discuss the impact on human health and disease. jci.org/articles/view/…

How we measure intestinal permeability and how diet affects permeability. #MedTwitter #GITwitter onlinelibrary.wiley.com/doi/10.1111/ap…

Uniting against enteric invaders: IgA meets its microbial ally Preview by Gerner highlighting work of Emma Slack #IStandWithUkraine combining oral vaccination with a niche-competing strain to selectively eliminate Salmonella spp. and related Escherichia coli. cell.com/cell-host-micr…

Gut inflammation promotes microbiota-specific CD4 T cell-mediated neuroinflammation | Nature nature.com/articles/s4158…

A brief guide to statistical analysis of grouped data in preclinical research go.nature.com/4ncNcVJ

Upper-gastrointestinal tract metabolite profile regulates glycaemic and satiety responses to meals with contrasting structure: a pilot study nature.com/articles/s4225…

Today's highlight: "A blueprint for contemporary studies of microbiomes" as part of 'Microbiome 101: what you need to know' theme for #worldmicrobiomeday jacquesravel Professor Sharon Huws microbiomejournal.biomedcentral.com/articles/10.11…

New review in nature Reviews Gastroenterology & Hepatology: Intestinal pH is an underappreciated regulator of human gut #microbiome, influencing microbial pathway expression and enzymatic activity with direct links to health. Great collaboration! Link: nature.com/articles/s4157…

It's no longer true that #IBS and other disorders of gut-brain interaction are 'all in the head' New clues found that intestinal immune activation emerges as a new culprit in abdominal pain and altered bowel patterns: loom.ly/glsxLRU

Culturing the uncultured anaerobes from the perspective of microbial growth curves dlvr.it/TLkyrf