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Destabilized microbial networks with distinct performances of abundant and rare biospheres in maintaining networks under increasing salinity stress #Bioinformatics #microbiome #networks #environnement #biosphere Wiley Microbiology Wiley Ecology & Evolution onlinelibrary.wiley.com/doi/10.1002/im…

EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research, created by Yong-Xin Liu Tao Wen Liang Chen Huiluo Cao 曹慧荦 Pengfan Zhang Jiqiu Wu 吴季秋 Renyou Gan Zhicheng Ju #bioinformatics onlinelibrary.wiley.com/doi/full/10.10…

Synergistic effects of diazotrophs and arbuscular mycorrhizal fungi on soil biological nitrogen fixation after three decades of fertilization #Bioinformatics #microbiome #Ecology #nitrogen Wiley Microbiology Wiley Ecology & Evolution onlinelibrary.wiley.com/doi/10.1002/im…

iMeta | MBPD: A multiple bacterial pathogen detection pipeline for One Health practices doi.org/10.1002/imt2.82 iMeta Wiley Microbiology Wiley Plant Science youtu.be/-xhFCFpmi-8

Microorganisms as bio‐filters to mitigate greenhouse gas emissions from high‐altitude permafrost revealed by nanopore‐based metagenomics #Bioinformatics #microbiome #nanopore #ClimateCrisis #globalwarming Wiley Microbiology Wiley in research onlinelibrary.wiley.com/doi/10.1002/im…

HOW TO BE VIRULENT: Plant pathogen effectors act independently of their genetic background to enable virulence @dguttman @DesveauxLab Tatiana Ruiz-Bedoya Cell and Systems Biology University of Toronto nature.com/articles/s4156…

iMeta progress and acknowledgment of reviewers in 2022. Thanks to the editorial board members and reviewers for their contributions. #Bioinformatics #microbiome #metagenomics Jingyuan Fu Yong-Xin Liu Chunlin Danyi Li Wiley Microbiology onlinelibrary.wiley.com/doi/10.1002/im…

An overview of host‐derived molecules that interact with gut microbiota #guthealth #microbiome #immunesystem #MedTwitter Wiley Microbiology Wiley Biomedical Science Wiley Clinical Health onlinelibrary.wiley.com/doi/10.1002/im…

Congratulations! 👏👏👏 After the evaluation of the Editorial Team and voting by our readers, there are two graphical abstracts awarded as iMeta Best Graphical Abstract 2022! Lianmin Chen Leyuan Li Daniel Figeys Zhibin Ning NorthOmics lab #Bioinformatics #metaproteomics #Graphics

QCMI: A method for quantifying putative biotic associations of microbes at the community level #Bioinformatics #pipeline #network #R #rstats #ecology Wiley Microbiology Wiley in research onlinelibrary.wiley.com/doi/10.1002/im…

iMeta | EasyAmplicon: An easy-to-use pipeline for amplicon data analysis in microbiome iMeta Wiley Microbiology youtu.be/M1AdE5B9GJQ

The sampling strategy of oral microbiome. This protocol introduced sample collection, transport, processing, and storage of oral microbiome. #protocol #oralhealth #microbiome Wiley Microbiology Wiley Clinical Health Wiley Biomedical Science onlinelibrary.wiley.com/doi/10.1002/im…

New paper out! Massive experimental work to show how root exudates mediate plant interspecific interactions w/ implications for #microbial-mediated #soil #suppressiveness Khashi u Rahman, PhD Molecular Plant & Plant Communications Department of Plant Science One Health Microbiome Center Huck Institutes Penn State College of Agricultural Sciences cell.com/molecular-plan…

SeqKit has got 1000 citations 🎉 We've been fixing bugs and adding new features during the last 7 years, with 17 sub-commands added and 50 versions released after publication. We also emphasize usability, sustainable development and maintenance of our tools 🤝.

One more exciting intratumoral microbiota study! Dietary tryptophan metabolite released by intratumoral Lactobacillus reuteri facilitates immune checkpoint inhibitor treatment doi.org/10.1016/j.cell…

Quantitative microbiome profiling reveals the developmental trajectory of the chicken gut microbiota and its connection to host metabolism #Bioinformatics #gutmicrobime #metabolism #metagenomics #guthealth #development Wiley Microbiology Wiley Ecology & Evolution onlinelibrary.wiley.com/doi/full/10.10…

The best practice for microbiome analysis using r. - Wen T et al. - dx.doi.org/10.1093/procel… #microbiome

Our Executive Editor Prof. Yong-xin Liu Yong-Xin Liu, Dr. Danyi Li Danyi Li, and Dr. Yunyun Gao Yunyun Gao published a review on Microbiome research outlook: past, present, and future, highlighting major advancements in microbiome research, that aim to enhance disease

The airway microbiome mediates the interaction between environmental exposure and respiratory health in humans | Nature Medicine nature.com/articles/s4159…

Just out in Nature Communications led by Prof Yuan's team! It reported a novel approach to combat wilt disease in #tomato plants by targeting the rhizosphere with prebiotic metabolites. This protects tomatoes, but also other Solanaceae crops like pepper &eggplants. nature.com/articles/s4146…