Excited to share Nicheformer! Led by Alejandro Tejada Lapuerta & @AnnaCSchaar, Nicheformer is a foundation model for single-cell & spatial omics. Its innovation is going beyond disassociated analysis to capture & predict local tissue context at single-cell level. biorxiv.org/content/10.110…

1/8 Happy to share Prophet, done with Yuge Ji and Fabian Theis! We have trained a single model across more than 4.7M public cell experiments to predict phenotypic responses (IC50, Cell Painting morphology features, RNA expression, ...). One single model to predict everything.

1/6 Looking for neural estimators of entropic #OptimalTransport or simply cool applications of #FlowMatching? Excited by novel generative modeling tools for #SingleCell data? Check out our #GENOT #NeurIPS paper tinyurl.com/yc5deeke!

Beyond happy that this collaborative project, led by the amazing Aristeidis Papargyriou, is finally out in Nature Biomedical Engineering! Really well explained in his tweetorial. Many thanks to Malte Luecken and Fabian Theis.

Come join us at the LMRL workshop at #ICLR2025 🚀

Consider submitting your work and meet us at #ICLR2025 🚀

Thanks for featuring our work, TU München! Excited to see our work on self-supervised learning in single-cell genomics highlighted here. 🧬 #MachineLearning #SingleCell nature.com/articles/s4225…

Meet us at Hall 3 #017 🙌

I meant to tweet my ICLR papers before the conference, but figured I'd wait until it was comically late. If you’ve got a time machine, drop by our posters! If not, here's a thread of links to the papers, with aggressively brief summaries. Huge credit to brilliant co-authors! 0/5

Today marks the last day of my summer internship at Microsoft Research! 'Twas a fantastic summer with lots of fun & cool research (stay tuned) Huge thanks to Kevin K. Yang 楊凱筌 Ava Amini & Sarah Alamdari for being great mentors throughout the summer :)

🚨The Bits to Binders Competition has concluded!🧬 One year ago we gathered scientists from around the world to design and submit protein binders that cause immune cells to target and eliminate CD20+ tumors Spoiler: They work!

I am looking for PhD students and postdocs to join our group in beautiful Munich at the Technical University of Munich and Helmholtz Munich. PhD application info: drive.google.com/file/d/1PM-y0s… postdoc application info: drive.google.com/file/d/1ripNnM… Please help me spread the word! 🤗

MSR NYC is hiring spring and summer interns in AI/ML/RL!

Are you a PhD student interested in machine learning and biology or health? Come do an internship with me, Ava Amini, Alex Lu, Lorin Crawford, or Kristen Severson at @msrne! Applications are due Dec 1: make sure you include a research statement! jobs.careers.microsoft.com/global/en/job/…