Andries van Tonder (@triedzi) 's Twitter Profile
Andries van Tonder

@triedzi

Research Associate at Department of Veterinary Medicine, University of Cambridge

ID: 589174833

calendar_today24-05-2012 12:45:59

1,1K Tweet

388 Followers

591 Following

Joachim Schork (@joachimschork) 's Twitter Profile Photo

Need to visualize multi-dimensional categorical data in R? ggalluvial, an extension of ggplot2, makes it easy to create alluvial diagrams and Sankey plots, helping you uncover patterns and flows across categories. ✔️ Plot alluvial diagrams to represent relationships between

Need to visualize multi-dimensional categorical data in R? ggalluvial, an extension of ggplot2, makes it easy to create alluvial diagrams and Sankey plots, helping you uncover patterns and flows across categories.

✔️ Plot alluvial diagrams to represent relationships between
Joachim Schork (@joachimschork) 's Twitter Profile Photo

Visualizing gene structures in R? gggenes, an extension of ggplot2, simplifies the process of creating clear and informative gene diagrams, making genomic data easier to interpret and share. ✔️ Plot gene arrows to represent gene locations and orientations. ✔️ Visualize genomic

Visualizing gene structures in R? gggenes, an extension of ggplot2, simplifies the process of creating clear and informative gene diagrams, making genomic data easier to interpret and share.

✔️ Plot gene arrows to represent gene locations and orientations.
✔️ Visualize genomic
Alexandre Almeida (@alexmsalmeida) 's Twitter Profile Photo

Delighted to share the first peer-reviewed paper from our team Cambridge Vet School Cambridge University where we investigate the ecological dynamics of Enterobacteriaceae in the human gut #microbiome: nature.com/articles/s4156… Nature Microbiology

Stephen Turner 🦋 @stephenturner.us (@strnr) 's Twitter Profile Photo

CompàreGenome: a command-line tool for genomic diversity estimation in prokaryotes and eukaryotes bmcbioinformatics.biomedcentral.com/articles/10.11… 🧬🖥️🧪 #Rstats github.com/gmoro-bioecope…

CompàreGenome: a command-line tool for genomic diversity estimation in prokaryotes and eukaryotes bmcbioinformatics.biomedcentral.com/articles/10.11… 🧬🖥️🧪 #Rstats github.com/gmoro-bioecope…
Oliver Schwengers 🇩🇪🇪🇺🇺🇦 (@oschwengers1) 's Twitter Profile Photo

🦠🧬🖥️ New Bakta DB v6.0 released! After a year, it was time for a Bakta database update - and it's a huge one: - IPS: 330.9M - PSC: 135.3M - PSCC: 37M doi.org/10.5281/zenodo… 👇 1/6

Andries van Tonder (@triedzi) 's Twitter Profile Photo

I've spent some time updating my two Nextflow-based bacterial QC pipelines (bacQC and bacQC-ONT). It'd be great to get some feedback. github.com/avantonder/bac… github.com/avantonder/bac…

Phil Ewels (@tallphil) 's Twitter Profile Photo

Super happy to see the new Nextflow training videos up online. This is a brand new course for beginners, called #Hello #Nextflow - we've run it a few times and the feedback has been great! Material is at training.nextflow.io and videos on YouTube: youtube.com/watch?v=G3CV-F…

Sam Manna (@sam_manna3) 's Twitter Profile Photo

Interested in a PhD focusing on Streptococcus pneumoniae or pyogenes? Our group is looking for new PhD students to join our lab! Apply here: career10.successfactors.com/sfcareer/jobre…

Wei Shen 沈 伟 (@shenwei356) 's Twitter Profile Photo

Just updated seqkit, csvtk, taxonkit, and rush. Click to see changes: - github.com/shenwei356/seq… - github.com/shenwei356/tax… - github.com/shenwei356/csv… - github.com/shenwei356/rus…

Josie Bryant (@josie_m_b) 's Twitter Profile Photo

If you have experience in sc/spatial transcriptomics with an interest in microbes....come and join our team as a computational postdoc: sanger.wd103.myworkdayjobs.com/WellcomeSang... Incredibly exciting datasets on host-microbe interactions in the lung. Pls RT and reach out if you are interested

Andries van Tonder (@triedzi) 's Twitter Profile Photo

Another week and more pipeline updates, this time my two assembly pipelines: Illumina: github.com/avantonder/ass… ONT: github.com/avantonder/ass… Have a try and let me know what you think

bovine tb (@bovinetb) 's Twitter Profile Photo

Tuberculosis in found dead badgers at the edge of the expanding bovine tuberculosis epidemic. Published: 27 March 2025 nature.com/articles/s4159…

Oliver Schwengers 🇩🇪🇪🇺🇺🇦 (@oschwengers1) 's Twitter Profile Photo

We happily present: “Bakta Web – rapid and standardized genome annotation on scalable infrastructures” Oxford University Press NAR’s Web Server issue doi.org/10.1093/nar/gk… Easy to use, no registration, fast, various visualizations, in sync with Bakta CLI: bakta.computational.bio (1/5)

Jimmy Lee (@thjimmylee) 's Twitter Profile Photo

Ever wondered what a snapshot of single cell/spatial dataset can reveal? scCellFie - a scalable tool that goes beyond gene expression, making metabolic analysis possible 3-2-1 Say GENES🤳 BioRxiv doi.org/10.1101/2025.0… TRY NOW sccellfie.readthedocs.io #DataScience #Bioinformatics

Daryl Domman (@ddomman) 's Twitter Profile Photo

🚨 Out now!🚨 Our #OneHealth study on multidrug-resistant #Shigella spread between humans & primates in Albuquerque is live Nature Communications 👉 nature.com/articles/s4146… Massive thanks to NM Dept. of Health , UNM Health Sciences , Los Alamos National Laboratory , ABQ BioPark , City of Albuquerque & lead author Sarah Shrum Davis ! 🔬🦠

Andries van Tonder (@triedzi) 's Twitter Profile Photo

We will be running the next in person iteration of our bacterial genomics course in Cambridge at the beginning of July. Please let anyone who may be interested know. training.cam.ac.uk/bioinformatics…

Stephen Turner 🦋 @stephenturner.us (@strnr) 's Twitter Profile Photo

Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis genome.cshlp.org/content/34/10/… 🧬🖥️ github.com/bacpop/ska.rust 🦀

Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis genome.cshlp.org/content/34/10/… 🧬🖥️  github.com/bacpop/ska.rust 🦀