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Excited to share 'Squidpy', our toolbox for spatial single cell analysis. Led by Giovanni Palla & Hannah Spitzer, we extend #Scanpy's infrastructure and analyses to store, manipulate & interactively visualize spatial omics data. Read at biorxiv.org/content/10.110… squidpy.readthedocs.io

Cellarity raised $123M Series B financing to drive a new approach to #drugdiscovery targeting the cell. Our blend of expertise across systems biology, high-res data, and #machinelearning is uncovering treatments for patients. #cellbehavior #singlecell #ai bit.ly/2ZMhyoE

(1/6) Just released: CellRank 1.3 (bit.ly/31wgMgt) works beyond RNA velocity by introducing new ways to compute transition matrices and methods to visualize them. Our new external module encourages community engagement and new tutorials make it easier to get started.

In partnership w/ Fabian Theis of Helmholtz Munich | @HelmholtzMunich, we’ve built & open sourced #AI that will accelerate discovery of new drug combinations. ai.facebook.com/blog/ai-predic…

Stunning talk by Özlem Türeci BioNTech SE at our Helmholtz Munich | @HelmholtzMunich townhall meeting, describing their #covid19 vaccine development in only 10 months, now administered to 260M people - what a success story!

Very happy that our transfer learning approach for single cell genomics is out Nature Biotechnology! Led by @MohammadLotfol1, scArches allows querying & mapping own data on reference atlases without reintegrating or sharing original data. go.nature.com/3kzaSnT github.com/theislab/scarc…

Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin go.nature.com/3mLPL2y

(1) Finally out, after one of the most painful and long reviews (with nitpicky reviews, see my last comment) is a method that I am extremely proud of and excited about. One of the best in my career: nature.com/articles/s4159…

Finally published in Nature Methods: CellRank for directed #SingleCell fate mapping, our take on studying cellular dynamics using RNA velocity. Fantastic collab between labs of dana_peer @sloan_kettering and Fabian Theis Helmholtz Munich | @HelmholtzMunich, read at go.nature.com/3Fm17lt. 1/17

More exciting news on this: our work has made the cover of Nature Biotechnology. AI helps democratize to analyze single-cell data! It basically works like a google map navigator to navigate you through the map of cells to analyze your data!

Honored that our scArches paper made cover Nature Biotechnology! It allows you to project (or query) single cell expression data onto existing reference atlases without need for full data integration by leveraging transfer learning. nature.com/articles/s4158… github.com/theislab/scarc…

Squidpy 🌌🍤🐍🎉 is out in Nature Methods ! Truly collab effort with Hannah Spitzer Michal Klein Fabian Theis lab! nature.com/articles/s4159…

A bit late to the party, but excited to add summer interns to my team and appreciative of any help to spread the word. Benchmark: 2/2 previous summer interns with multiple job offers have since joined full time. The 3rd is censored (yet to graduate). linkedin.com/feed/update/ur…

Introducing scPerturb, a collection of 44 single cell perturbation datasets with unified annotations available at scperturb.org (1/5)