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My wife has recently been awarded the highly competitive K99/R00 award from NHGRI, will develop new methods to study single-cell and spatial DNA methylation

Tonight I will sleep easy for the first time in a long time. >500,000 single T cell transcriptomes, all publicly available. Also accepting donations after we spent all our money on this study. 🤣 Thank you so much nature! Have at it, world! 🍾🍾🍾 nature.com/articles/s4158…

Our new tool for visualizing single-cell genomic data cell.com/action/showPdf…

genomebiology.biomedcentral.com/articles/10.11…

A tissue ubiquitous gene set for cellular senescence biorxiv.org/cgi/content/sh… #biorxiv_cellbio

Read our latest #research on GPT-4 for cell type annotation #SingleCell, published in Nature Methods by Springer Nature. w/zhicheng ji Paper: rdcu.be/dCnCa Software: github.com/Winnie09/GPTCe… ColumbiaPublicHealth

A systematic evaluation of computational methods for cell segmentation academic.oup.com/bib/article/25…

Read our latest #research on GPT-4 for generating programming code, published in Advanced Science by Wiley. w/ zhicheng ji Paper: onlinelibrary.wiley.com/doi/10.1002/ad… ColumbiaPublicHealth Columbia University

Distinct myeloid-derived suppressor cell populations in human glioblastoma doi.org/10.1126/scienc… Drew Pardoll Science Magazine

EpiFoundation: A Foundation Model for Single-Cell ATAC-seq via Peak-to-Gene Alignment 1/ EpiFoundation is a novel foundation model designed for single-cell ATAC-seq data, addressing the challenges of high-dimensional, sparse peak data. It uses innovative peak-to-gene alignment

Assessing Large Multimodal Models for One-Shot Learning and Interpretability in Biomedical Image Classification (Zhicheng Ji and co-workers) 🔓 onlinelibrary.wiley.com/doi/10.1002/ai…

Comparative analysis of gene regulation in single cells using Compass dlvr.it/TKf9r5

Vispro improves imaging analysis for Visium spatial transcriptomics genomebiology.biomedcentral.com/articles/10.11…