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We are opening two positions at the Bioimage informatics unit – BIIF! BIIF is a unit of SciLifeLab , and also part of the National Bioinformatics Infrastructure Sweden (NBIS) . What can you do while working with BIIF?

Let's go for Day 2 of the eRImote Euro-BioImaging ERIC distributed python course! Today's lesson on image segmentation and feature extraction is by France-BioImaging Research Infrastructure with Marvin Albert and Marie Anselmet 💻 Hosted in Lisbon by the GIMM Foundation Oeiras node.

🎉 Huge success at the "Intro to BioImage Analysis with Python for Life Scientists" course! Thanks to Euro-BioImaging ERIC, eRImote, Jean-Yves Tinevez, Rafael Camacho, and @gabymartins for making it happen! Inspiring to see #BioImageAnalysis community thriving! #AI4Life #PPBI #Python

Great opportunity to join Turku BioImaging (Finland) image data team as an image data analyst. Team is great, work is fun and as a plus I'm located in the same corridor 😅 Join our great imaging family in Turku!

1. Marvin Albert Marvin Albert will present *multi-view stitcher*, a Python framework for registration, stitching and fusion of multi-tiles, multi-view images.

multiview-stitcher: A python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D. github.com/multiview-stit… multiview-stitcher.github.io/napari-stitcher Poster 129 Session 2 on Thursday 24/10 at 2pm

2. Marie Anselmet could not join due to admin reasons, but Stephane Rigaud kindly volunteered to put her poster> In it we relate our WIP towards #TrackMate v8. This is a forthcoming new major version geared towards applications in microbiology.

3. Gaëlle Letort @gaLLetort has a poster showcasing two tools for developmental biology. The first one is #DeXtrusion, an AI tool built for the automated detection of rare events in time-lapse. Published here journals.biologists.com/dev/article/15… code here gitlab.pasteur.fr/gletort/dextru…

@gaLLetort The 2nd tool on @gaLLetort's poster is #EPICURE, a #napari tool for accelerate and facilitate manual and automatic tracking cells in epithelial tissues:

@gaLLetort 4. Minh-Son Phan Minh-Son Phan will present his recent work just published on the cell fate specification via lateral inhibition in Schweisguth’s lab of the @DevStem_Pasteur He spoke about it last week here: x.com/MinSonPhan/sta… .

@gaLLetort Minh-Son Phan @DevStem_Pasteur 5. Stéphane Rigaud Stephane Rigaud and Robert Haase will animate a workshop on #clEsperanto. CLE is a GPU-accelerated image processing library, that aims at offering lightning fast image processing with all GPU on all major OSes,

If you didn't yet have enough good reasons to share your bioimage data, Matthew (BioImage Archive), Josh (Josh Moore), Erin (@tuesdaystitches), Assaf (Assaf Zaritsky) and I are here with squirrel drawings to convince you that you should do it: journals.biologists.com/jcs/article/13…

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)

We BIIF_Sweden had great fun teaming up with Frederic Ballllosera Navarro from Emma Lundberg's lab for an #i2k workshop! We discussed tools and approaches for #multiplex image data, and showed #PIPEX #TissUUmaps #spatialdata!

OME-Zarr: "Even a talk on formats [can be] interesting" Josh Moore Pavel Tomancak #I2K2024 #BioImageAnalysis

Ahhh this felt amazing!! 🤩 Super happy to have given a selected talk at this AWESOME conference #I2K2024 ♥️♥️ Thanks to everyone for the amazing discussions!! ☺️

Amazing, Stephane Rigaud is demonstrating multi-GPU support🎉 using #pyclesperanto(without _prototype) for #BioImageAnalysis at #I2K2024(virtual)!🔬🖥️🚀 The notebook is available online #openaccess github.com/StRigaud/clesp…

Bioimage analysts have a huge impact on modern biology research and can enable so much more when appropriately resourced. Read our piece and maybe also casually drop it on the desk of your PI/Head of Department/Dean/rich uncle!

I'm presenting a poster at CZI Science Imaging The Future on the Three Gears of BioScience Projects. I will discuss how #imaging, analysis and modelling synergize and are fueled by clearly defined questions, and also how far should support go. 10.6084/m9.figshare.27725865

Tomorrow is the last day!!! If you see this on Tuesday the 10th — TODAY!!! 🚨 If you see this after the 10th… you missed out… 😜