Michelle M. Li (李敏蕊) (@_michellemli) 's Twitter Profile
Michelle M. Li (李敏蕊)

@_michellemli

Contextual learning on graphs for precision medicine | Biomedical Informatics PhD @marinkazitnik @HarvardDBMI | Math+CS BS @Stanford | Founder @rerootstem

ID: 288493709

linkhttp://michellemli.com calendar_today26-04-2011 23:26:17

336 Tweet

947 Followers

388 Following

Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Excited to share TxGNN, a model that identifies potential therapies from existing medicines for thousands of diseases. Trained across 17,080 diseases, TxGNN predicts drug candidates for conditions with limited or no treatment options, including rare diseases Nature Medicine

Excited to share TxGNN, a model that identifies potential therapies from existing medicines for thousands of diseases. Trained across 17,080 diseases, TxGNN predicts drug candidates for conditions with limited or no treatment options, including rare diseases

<a href="/NatureMedicine/">Nature Medicine</a>
Cell Systems (@cellsystemscp) 's Twitter Profile Photo

Putting proteins in context: Clara (Mengzhou) Hu & Trey Ideker spotlight PINNACLE, a geometric DL approach that generates contextualized representations of proteins by combined analysis of protein interactions and multiorgan single-cell transcriptomics cell.com/cell-systems/a…

Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Excited to share our perspective in Cell, where we discuss “AI scientists” as collaborative AI agents designed to empower biomedical research cell.com/cell/fulltext/… While the concept of an “AI scientist” is aspirational, advances in agent-based AI are paving the way

Excited to share our perspective in <a href="/CellCellPress/">Cell</a>, where we discuss “AI scientists” as collaborative AI agents designed to empower biomedical research 
cell.com/cell/fulltext/…

While the concept of an “AI scientist” is aspirational, advances in agent-based AI are paving the way
Symposium on AI for Learning Health Systems (@sailhealth) 's Twitter Profile Photo

🚨 CALL FOR ABSTRACTS OPEN 🚨 Join #SAIL25 from May 6-9 in Río Grande, Puerto Rico 🏝️ Top abstract will be awarded travel support and cash scholarships by NEJM AI. In-person attendance is limited to those with accepted work. Submit by January 17th: sail.health/event/sail-202…

🚨 CALL FOR ABSTRACTS OPEN 🚨

Join #SAIL25 from May 6-9 in Río Grande, Puerto Rico 🏝️

Top abstract will be awarded travel support and cash scholarships by <a href="/NEJM_AI/">NEJM AI</a>.

In-person attendance is limited to those with accepted work.

Submit by January 17th: sail.health/event/sail-202…
Michelle M. Li (李敏蕊) (@_michellemli) 's Twitter Profile Photo

Are you ready for another year of exciting discussions around ✨effective integration of AI into clinical medicine✨!?!? 🙌🏼 Submit an abstract for your work to be part of the discussion! 📥 Please feel free to reach out if you have any questions. 🗣️

Symposium on AI for Learning Health Systems (@sailhealth) 's Twitter Profile Photo

#SAIL25 will feature a review of the most impactful articles, news and events throughout this year in medical AI. Join us from May 6-9 in Rio Grande, Puerto Rico, for our Year-in-Review!! Submit your abstract by January 17th: sail.health/event/sail-202…

DBMI at Harvard Med (@harvarddbmi) 's Twitter Profile Photo

CALL FOR ABSTRACTS | SAIL 2025 on May 6–9 in Río Grande, Puerto Rico! In-person attendance limited to those with accepted work. Apply by 1/17/25. Oral presentation invitations & NEJM AI-sponsored travel awards go to the top abstract submissions. #SAIL25 - mailchi.mp/sail.health/sa…

CALL FOR ABSTRACTS | SAIL 2025 on May 6–9 in Río Grande, Puerto Rico! In-person attendance limited to those with accepted work. Apply by 1/17/25. Oral presentation invitations &amp; <a href="/NEJM_AI/">NEJM AI</a>-sponsored travel awards go to the top abstract submissions. #SAIL25 - mailchi.mp/sail.health/sa…
Yasha Ektefaie (@yektefaie) 's Twitter Profile Photo

Excited to announce SPECTRA has been published in Nature Machine Intelligence! Use this link to access the paper: rdcu.be/d2D0z A big thank you to all my collaborators Andrew Shen @ ICLR 2025, Daria Bykova, and Maximillian Marin and to my advisors Marinka Zitnik and Maha Farhat.

Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Are biomedical AI models truly as smart as they seem? Yasha Ektefaie rdcu.be/d2D0z Our Nature Machine Intelligence paper introduces SPECTRA, a framework that evaluates models by considering the full spectrum of cross-split overlap: train-test similarity SPECTRA reveals gaps in

Are biomedical AI models truly as smart as they seem? <a href="/YEktefaie/">Yasha Ektefaie</a>

rdcu.be/d2D0z

Our <a href="/NatMachIntell/">Nature Machine Intelligence</a> paper introduces SPECTRA, a framework that evaluates models by considering the full spectrum of cross-split overlap: train-test similarity

SPECTRA reveals gaps in
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Medicine thrives on knowledge, yet clinical vocabularies are fragmented. AI struggles to unify this knowledge, creating a gap in precision medicine. Excited to share unified clinical vocabulary embeddings, a project led by stellar Ruthie Johnson Half of healthcare foundation AI

Medicine thrives on knowledge, yet clinical vocabularies are fragmented. AI struggles to unify this knowledge, creating a gap in precision medicine. Excited to share unified clinical vocabulary embeddings, a project led by stellar <a href="/ruthie_johnson/">Ruthie Johnson</a>

Half of healthcare foundation AI
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

(1/4) Excited to introduce ProCyon: a multimodal foundation model to model, generate, and predict protein phenotypes, led by stellar Owen Queen Yepeng Robert Calef Valentina Giunchiglia 👉 biorxiv.org/content/10.110… ProCyon is an 11B parameter multimodal model that integrates protein

(1/4) Excited to introduce ProCyon: a multimodal foundation model to model, generate, and predict protein phenotypes, led by stellar <a href="/oq_35/">Owen Queen</a> <a href="/YepHuang/">Yepeng</a> Robert Calef <a href="/valegiunca/">Valentina Giunchiglia</a>

👉 biorxiv.org/content/10.110…

ProCyon is an 11B parameter multimodal model that integrates protein
DBMI at Harvard Med (@harvarddbmi) 's Twitter Profile Photo

We're in a polar vortex now, but brighter days will come to Boston... along with the 21st year of our Summer Institute in Biomedical Informatics #SIBMI for US-based undergrad quants! Applications close January 31. bit.ly/sibmi #summerinternship

We're in a polar vortex now, but brighter days will come to Boston... along with the 21st year of our Summer Institute in Biomedical Informatics #SIBMI for US-based undergrad quants! Applications close January 31. bit.ly/sibmi #summerinternship
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

What if you could rewind time, tweak a decision, and watch the future unfold differently, one precise edit at a time? That’s exactly what CLEF does for sequences in biology and medicine Michelle M. Li (李敏蕊) Controllable sequence editing: generate precise, time-sensitive

What if you could rewind time, tweak a decision, and watch the future unfold differently, one precise edit at a time? 

That’s exactly what CLEF does for sequences in biology and medicine <a href="/_michellemli/">Michelle M. Li (李敏蕊)</a>

Controllable sequence editing: generate precise, time-sensitive
Ada Fang (@adafang_) 's Twitter Profile Photo

Introducing ATOMICA 💫 A model to universally represent molecular interactions (for proteins, nucleic acids, small molecules, and ions) at an all-atom scale 🧵

Introducing ATOMICA 💫 

A model to universally represent molecular interactions (for proteins, nucleic acids, small molecules, and ions) at an all-atom scale 🧵
Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

Meet ATOMICA 🧬 Kudos to stellar Ada Fang Universal AI model that learns atom-scale representations of interactions across all molecular types: small molecules, metal ions, peptides, proteins, DNA, and RNA Stay tuned for our wet lab results, and check out Ada Fang thread 👇

Marinka Zitnik (@marinkazitnik) 's Twitter Profile Photo

📢 🧬 New preprint! Can we predict which cancer patients will benefit, before treatment begins? Wan Xiang Shen Immunotherapy saves lives but many patients don’t respond to treatment, and we still lack reliable tools to predict who will benefit We introduce COMPASS, foundation

📢 🧬 New preprint!
Can we predict which cancer patients will benefit, before treatment begins? <a href="/WanXiang_Shen/">Wan Xiang Shen</a>

Immunotherapy saves lives but many patients don’t respond to treatment, and we still lack reliable tools to predict who will benefit

We introduce COMPASS, foundation