Hello! New preprint here awesome work by Anjali Doshi Marian et al where we genetically engineered the distinct bullseye swarming of Proteus mirabilis, and used it to record multiple/dynamic external inputs on petri dishes Columbia BME biorxiv.org/content/10.110…

Great collaboration with Andrew Laine and Jia Guo. We also developed a deep learning pipeline for analyzing macroscale bacteria colony features recently put out here biorxiv.org/content/10.110… Congrats all!

Hello Twitter, so excited to share my work in the Tal Danino lab with the world in the form of two preprints! If we can decode the rings of tree-trunks to learn about their past, why not rings in bacterial colonies? First preprint here: biorxiv.org/content/10.110…

Second project I co-led with @_shaw_marth! As we worked on engineering Proteus mirabilis, we realized that traditional methods of measuring colonies by hand don't scale up. So we developed a semi-automated pipeline to segment colony images: biorxiv.org/content/10.110…

So excited to see our work with P. mirabilis mentioned in this new review! Marian Shaw #syntheticbiology #pattern

A new paper from anjalidoshi16, Tal Danino, Marian Shaw , Columbia BME engineered the bacterium Proteus mirabilis to harness its swarming behavior as an environmental recorder. Free to read link at rdcu.be/dbonK

Thrilled to share TWO accomplishments, a quick 🧵about the first: my first-author paper covering the bulk of my PhD is out today in Nature Chemical Biology! link here: nature.com/articles/s4158… (1/3)

Our latest paper engineering bacterial swarm patterns as biosensor readouts is out in Nature Chemical Biology! Led by @anjalidoshi16, Marian Shaw, collaborating w/ Andrew Laine, Jia Guo, we encode inputs like copper in visible patterns & decode w/ AI. Congrats all! nature.com/articles/s4158…