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I’m proud & excited to share the first major preprint of my postdoc in Broz Lab, Université de Lausanne. We systematically mapped interactions during bacterial-viral co-infection: doi.org/10.21203/rs.3.… Thanks to EMBO, Faculté de biologie et de médecine (inactif), and all my colleagues at Department of Immunobiology at UNIL & mentors for the support.

Have you been meaning to learn how to analyze your latest single-cell RNA seq experiment, but don't know where to start? Join us for "Single-Cell Transcriptomics" in Bern next month for a three day intro analysis course! It's the first time the SIB offers this course in Python!

Our latest preprint, Mukund Kabbe's single-cell epigenomics (scATAC & Nano-Cut&Tag) of the adult human central nervous system, finding developmental epigenetic memory at HOX clusters in adult oligodendroglia! Karolinska Institutet biorxiv.org/content/10.110…

SIB Training Course 📣 Single-Cell Transcriptomics with Python 📷 27 - 29 May 2024 📷Alex Lederer Geert van Geest and Tania Wyss in person, Bern #bioinformatics #training #SIB #Python #SingleCell SIB SIBTraining Apply here:🚨 sib.swiss/training/cours…

Thank you Alex Lederer (Gioele La Manno lab) for a great presentation of VeloCycle at our NYU Single-Cell Club. VeloCycle is a new implementation of RNA velocity that combines velocity field and manifold estimation, tailored for the cell cycle.

Founded half a century ago, Europe’s life sciences laboratory continues to champion innovative scientific research, services, technology development, & training, with support of its member states. Join us as we celebrate our birthday this week #EMBL50🎂 embl.org/news/embl-anno…

I feel compelled to share my take. TL;DR: (1) the first iteration of anything cannot be perfect, (2) a one-size-fits-all path can be a minefield, (3) let's value diverse voices, (4) let’s prioritize rigorous tools even if, on the surface, it looks like they achieve less. [1/19]

Interested in navigating #metabolism in space and time? Meet uMAIA (the Unified Mass Imaging Analyzer) - a framework developed in collaboration with Giovanni D'Angelo & oaties EPFL Life Sciences led by Halima Hannah Schede & Leila #omics #lipidtime #MALDI biorxiv.org/content/10.110… 1/N

We’re happy and proud to share the most recent work from our group which was spearheaded by Philipp Walch and is now published online at Nature Communications: doi.org/10.1038/s41467… Department of Immunobiology at UNIL Faculté de biologie et de médecine (inactif) Université de Lausanne

I'm happy and honored to announce the publication of my research on co-infections and the role of host innate immune signaling in mediating pathogen-pathogen interactions in Nature Communications: nature.com/articles/s4146… You can find a look behind the paper here: go.nature.com/47XXz8P

VeloCycle, developed by the team of Gioele La Manno and The Naef Lab is a manifold-constrained RNA velocity framework for uncovering cell cycle dynamics. nature.com/articles/s4159…

2 new papers from the labs of EPFL Brain Mind Institute professors Gioele La Manno & Fides Zenk 👇 Lederer AR...Naef F, La Manno G. Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations. Nature Methods 2024 nature.com/articles/s4159…