🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Here’s a thread describing our (Zahra’s, Noor’s and my) effort in developing a simple, but modular - and hopefully extensible - workflow for evaluating long-read transcript quantification methods, and running on some recent tools: x.com/nomad421/statu…

Definitely give it a go!

A hackathon event by post-docs for post-docs! Fostering networking and collaboration through team-based challenges. Funded by the #TheoMurphyIniative & as part of #ABACBS2024. For more info: abacbs.org/emcr-hackathon APPLICATION DEADLINE EXTENDED - 26th August!

V. proud to share this new work from Ashley Weir in my group. A new gene expression based classifier for HDR in Ovarian Cancer. biorxiv.org/content/10.110…

📢 Registrations for the "Hello Nextflow!" workshop close tonight! biocommons.org.au/events/hello-n…

Published today in nature, we describe an approach for single-molecule protein reading on Oxford Nanopore arrays. By utilizing ClpX unfoldase to ratchet proteins through a CsgG nanopore, we achieved single-amino-acid sensitivity. nature.com/articles/s4158…

Google has a new experimental tool (Illuminate) that takes a link to a preprint and creates a "podcast" discussing the paper. I tested this with a few preprints that recently caught my attention (Ropebwt3, genomic language models, VEP guidelines) blog.stephenturner.us/p/illuminate-p…

more podcast to listen on the train

𝗦𝗧𝗔𝗠𝗣: single cell (spatial?) Being asked what I think about it (NOT involved). 1) What is STAMP? Should I care about it? STAMP is a clever way of using 𝘀𝗽𝗮𝘁𝗶𝗮𝗹 𝗮𝘀𝘀𝗮𝘆𝘀 to get 𝗶𝗻𝘀𝗮𝗻𝗲𝗹𝘆 𝗹𝗼𝘄 𝗰𝗼𝘀𝘁 𝘀𝗶𝗻𝗴𝗹𝗲 𝗰𝗲𝗹𝗹 𝗱𝗮𝘁𝗮 tinyurl.com/nwetc3te

#WGS long-read sequencing of #cancer using @Nanopore adds yield - particularly resolution of structural variation, identification of #HRD, #phasing and discovery of allele-specific #methylation of tumor suppressors #genomics cell.com/cell-genomics/…

For anyone who has struggled with code navigation of the nested nf-core shared modules, rejoice! The new Nextflow #VSCode extension code navigation makes this super fast! 🎉

I am looking for a postdoc to join my new team in Melbourne, Australia at WEHI to work on lung stem cells and disease, including lung cancers! International candidates+ those just finishing up PhDs welcomed Please apply below: tinyurl.com/54xsmc9e

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by Feng Alex Yan. Thnx to all contributors incl. Quentin Gouil for the pea data!

📣📣2 weeks until Abstract Deadline!!! Get your abstracts in now - you don't want to miss out.

scnanoseq nf-co.re/scrnaseq: an nf-core [Nextflow] pipeline for Oxford Nanopore single-cell RNA-sequencing biorxiv.org/content/10.110… 🧬🖥️🧪 github.com/nf-core/scnano…

Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS

Review: Transcriptomics in the era of long-read sequencing nature.com/articles/s4157… (read free: rdcu.be/efBjP) 🧬🖥️🧪

Ultrafast and accurate sequence alignment and clustering of viral genomes nature.com/articles/s4159… 🧬🖥️🧪 vclust github.com/refresh-bio/vc… clusty github.com/refresh-bio/cl…

🔬Applications for the EMBL Australia #PhD Course are now OPEN!🌟 Ready to kick-start your scientific career? Don't miss this opportunity to learn from Aus's best researchers! 📅 1-12 December, 2025 📍 South Australian immunoGENomics Cancer Institute, Adelaide ℹ️ Info & apply by 27 July: bit.ly/4kljhsO

While everyone was obsessing over CRISPR, a small team just quietly published a paper in Science solving genetic medicine's biggest problem. They created a system that can fix thousands of different mutations at once. Here's how they did it 🧵