1. Yesterday, at a panel at Yale Law School, our lab was publicly accused of research misconduct. We take these accusations incredibly seriously. Yet, this story is far more troubling-our science was attacked to help bad-faith opportunists, who lied to students.

BABAPPA: An Automated Pipeline for Codeml Mediated Selection Analysis Integrating PRANK and IQ-TREE2 biorxiv.org/content/10.110… #biorxiv_evobio

Blastn2dotplots: multiple dot-plot visualizer for genome comparisons. #DotPlot #Visualization #GenomeComparison #Genomics #Bioinformatics #BMCbioinformatics bmcbioinformatics.biomedcentral.com/articles/10.11…

Gene-Set Enrichment Analysis and visualization on the web using EnrichmentMap: RNASeq. #GeneSetEnrichmentAnalysis #WebTool #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics…

Here is a very detailed examination on how pigmentation in the cuticle of a butterfly wing scale changes the density and refractive index of chitin and, thus, also alters structural color. rdcu.be/eyUwS

So excited to share this preprint from the Rosin lab (lead by postdoc Leif Benner with help from LingSze Lee, PhD) in collaboration with the Hawley lab and Eelco Tromer on moth spermatogenesis! Want to know how sperm without DNA are made on purpose? Read on! biorxiv.org/content/10.110…

FANTASIA's paper is finally out! Check it out if you're interested in alternative methods to homology for functional annotation in nonmodel organisms 🦐🐙🪱🧬🐝🪲 Gemma Martínez Redondo [email protected] Institute of Evolutionary Biology (IBE) Centro Andaluz de Biología del Desarrollo LifeHUB.CSIC Customer Systems Inc nature.com/articles/s4200…

Tracing the evolution of sequencing into the era of genomic medicine nature.com/articles/s4157… (read free: rdcu.be/eAV5W)

GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures bioRxiv Bioinfo biorxiv.org/content/10.110…

1/ Most biologists fail at computation not because it’s hard— but because they start in the wrong place. Here’s the roadmap I wish I had 12 years ago.

(Harvard STAT115): Introduction to Bioinformatics and Computational Biology by Shirley Liu. liulab-dfci.github.io/bioinfo-combio/

My main PhD work Antonia Monteiro is now in NatureEcoEvo! We found a Hox gene promoter that helps butterflies🦋adjust their wing eyespots in response to seasonal temperatures🍃🍂, shedding light on the evolutionary origin of phenotypic plasticity. 1/9 nature.com/articles/s4155…

Enjoy! researchgate.net/profile/Arumug…

Claude scientific skills 🧬🖥️🧪 github.com/K-Dense-AI/cla… 🧬 Bioinformatics & Genomics 🧪 Cheminformatics & Drug Discovery 🔬 Proteomics & Mass Spectrometry 🤖 Machine Learning & AI 🔮 Materials Science & Chemistry 📊 Data Analysis & Visualization

Capsule: Comprehensive Reproducibility Framework for R and Bioinformatics Workflows github.com/SAADAT-Abu/Cap… ...Generates Docker containers, exports to Nextflow & Snakemake #Rstats

Life cycle simplifications in aphids drive changes in evolutionary rates and selection regimes academic.oup.com/mbe/advance-ar… Molecular Biology and Evolution

10 courses for my dream bioinformatics curriculum: 1. Unix Commands with Greg Wilson youtube.com/watch?v=U3iNcB… 2. statistics and R with Rafael Irizarry rafalab.dfci.harvard.edu/pages/harvardx…

Useful summary of how much has changed this year with NIH/NSF funding. nytimes.com/interactive/20…

The worst way to cut a pepper, and a better way to do it

This semester I taught Spatial Data Science with #rstats Students analyzed areal, geostatistical & point pattern data, creating fantastic projects on disease mapping 🗺️ air pollution 🏭 crime 🚨 & species modeling 🐾 Book freely available: 👉 paulamoraga.com/book-spatial/