🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Very pleased to present our latest tool in Patterns, a Cell Press journal, led by Chinedu Anthony Anene. It uses deep neural network to decompose transcriptomics into multivariable pathway activities and identify unknown pathway components. #MachineLearning #GEPs @FindlayCopley Barts Cancer Institute (Queen Mary) cell.com/patterns/fullt…

Our latest work on bioRxiv, highlighting how a virus can manipulate host cell non-coding RNA networks to enhance its replication. Nice work by Katie Harper, Tim Mottram and Becky Foster in collaboration with @cannenedr Andrew Macdonald and Westhead groups. biorxiv.org/cgi/content/sh…

We are hiring two bioinformaticians working in the field of squamous cancers, genomics / transcriptomics, single cell omics, machine learning, biomarkers Barts and The London, Queen Mary Barts Cancer Institute (Queen Mary) Blizard Institute webapps2.is.qmul.ac.uk/jobs/job.actio… webapps2.is.qmul.ac.uk/jobs/job.actio… please RT

git merge

Our latest work is out in EMBO Reports, highlighting how a virus manipulates a host ncRNA network to enhance its replication. Great work by Katie Harper, Tim Mottram and Becky Foster in collaboration with Chinedu Anthony Anene Andrew Macdonald and Westhead groups. embopress.org/doi/full/10.15…

Our latest work is now on bioRxiv, highlighting pseudouridine prevalence in the KSHV transciptome and implications for virus replication. Great work by Tim Mottram and Katie Harper in collaboration with Leeds'Omics and Chinedu Anthony Anene eur03.safelinks.protection.outlook.com/?url=https%3A%…

Programming Legumes v2.0 reddit.com/r/programmerhu…

If interested in applying for The Leverhulme Trust postdoc fellowship at the intersection of AI, evolutionary game and collective behaviour? Please get in touch or help RT See details here: tees.ac.uk/sections/resea… TU SCEDT

Still 3 more weeks to apply for a PhD with me in cancer evolution! If you want to find out more about the many exciting positions in our department, we're doing a hybrid informal intro tomorrow: chalmers.se/en/current/cal… (Non-Göteborg people can join on Zoom!)

This is a key point. Nihilism in terms of software used and an addiction to not understanding (h/t Amos Tanay) is not just poor scholarship, it also leads to wasted (graduate student and postdoc) time, NIH money, and lives of animals. The #scRNAseq field can do better. 20/

Large datasets do not require overly complex articles. The complexity of the results also reflects the analysis and the strength of the conclusions. Clear organizing principles translate in clear verifiable conclusions. "We got lots of data and did lots of things" is not a

There's a lot of excitement about foundation models and their ability to learn biology 🧬💻 But current tools for perturbation prediction perform worse than simple linear models! We need more careful benchmarking to make progress. biorxiv.org/content/10.110…

Thrilled to share our study where we define transcriptomic and immune subtypes of esophageal squamous cell carcinoma. We also develop a histology AI model that identifies specific histological features for each group. Barts Cancer Institute (Queen Mary) Barts Centre for Squamous Cancer Nature Communications nature.com/articles/s4146…

Happy to share our latest work showing that KSHV can modify paraspeckles to function as hubs for viral RNA processing. Great work by Katie Harper, Ellie Harrington, Connor Hayward in collaboration with Chinedu Anthony Anene, Wiyada Wongwiwat and Rob White. eur03.safelinks.protection.outlook.com/?url=https%3A%…

Testing out DeepSeek-R1's ability to do "science" in one-shot. I asked it to critique my 2017 R01 proposal which was scored Impact 26, 10% percentile, and funded by NINDS. (I wrote the proposal, I have the rights to share it with anyone or anything). I uploaded a PDF of my

I don’t post here much anymore, but this one is an important announcement for us: 🚨We are Recruiting! So come join us! 🚨#RNA #CancerResearch